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      Worldwide phylogeography of limpets of the order Patellogastropoda: molecular, morphological and palaeontological evidence

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      Journal of Molluscan Studies

      Oxford University Press (OUP)

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          The Clustal–X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

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            Estimating the rate of evolution of the rate of molecular evolution.

            A simple model for the evolution of the rate of molecular evolution is presented. With a Bayesian approach, this model can serve as the basis for estimating dates of important evolutionary events even in the absence of the assumption of constant rates among evolutionary lineages. The method can be used in conjunction with any of the widely used models for nucleotide substitution or amino acid replacement. It is illustrated by analyzing a data set of rbcL protein sequences.
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              Divergence time and evolutionary rate estimation with multilocus data.

              Bayesian methods for estimating evolutionary divergence times are extended to multigene data sets, and a technique is described for detecting correlated changes in evolutionary rates among genes. Simulations are employed to explore the effect of multigene data on divergence time estimation, and the methodology is illustrated with a previously published data set representing diverse plant taxa. The fact that evolutionary rates and times are confounded when sequence data are compared is emphasized and the importance of fossil information for disentangling rates and times is stressed.
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                Author and article information

                Journal
                Journal of Molluscan Studies
                Oxford University Press (OUP)
                1464-3766
                0260-1230
                February 01 2007
                February 01 2007
                : 73
                : 1
                : 79-99
                Article
                10.1093/mollus/eym001
                © 2007

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