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      A bacterial sulfonolipid triggers multicellular development in the closest living relatives of animals

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          Abstract

          Bacterially-produced small molecules exert profound influences on animal health, morphogenesis, and evolution through poorly understood mechanisms. In one of the closest living relatives of animals, the choanoflagellate Salpingoeca rosetta, we find that rosette colony development is induced by the prey bacterium Algoriphagus machipongonensis and its close relatives in the Bacteroidetes phylum. Here we show that a rosette inducing factor (RIF-1) produced by A. machipongonensis belongs to the small class of sulfonolipids, obscure relatives of the better known sphingolipids that play important roles in signal transmission in plants, animals, and fungi. RIF-1 has extraordinary potency (femtomolar, or 10 −15 M) and S. rosetta can respond to it over a broad dynamic range—nine orders of magnitude. This study provides a prototypical example of bacterial sulfonolipids triggering eukaryotic morphogenesis and suggests molecular mechanisms through which bacteria may have contributed to the evolution of animals.

          DOI: http://dx.doi.org/10.7554/eLife.00013.001

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          All animals, including humans, evolved in a world filled with bacteria. Although bacteria are most familiar as pathogens, some bacteria produce small molecules that are essential for the biology of animals and other eukaryotes, although the details of the ways in which these bacterial molecules are beneficial are not well understood.

          The choanoflagellates are water-dwelling organisms that use their whip-like flagella to move around, feeding on bacteria. They can exist as one cell or a colony of multiple cells and, perhaps surprisingly, are the closest known living relatives of animals. This means that experiments on these organisms have the potential to improve our understanding of animal development and the transition from egg to embryo to adult.

          Alegado et al. have explored how the morphology of Salpingoeca rosetta, a colony-forming choanoflagellate, is influenced by its interactions with various species of bacteria. In particular, they find that the development of multicellularity in S. rosetta is triggered by the presence of the bacterium Algoriphagus machipongonensis as well as its close relatives. They also identify the signaling molecule produced by the bacteria to be C 32H 64NO 7S; this lipid molecule is an obscure relative of the sphingolipid molecules that have important roles in signal transmission in animals, plants, and fungi. Moreover, Alegado et al. show that S. rosetta can respond to this molecule – which they call rosette-inducing factor (RIF-1) – over a wide range of concentrations, including concentrations as low as 10 −17 M.

          The work of Alegado et al. suggests that interactions between S. rosetta and Algoriphagus bacteria could be a productive model system for studying the influences of bacteria on animal cell biology, and for investigating the mechanisms of signal delivery and reception. Moreover, the molecular mechanisms revealed by this work leave open the possibility that bacteria might have contributed to the evolution of multicellularity in animals.

          DOI: http://dx.doi.org/10.7554/eLife.00013.002

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          Most cited references69

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          A rapid method of total lipid extraction and purification.

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            An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system.

            The mammalian gastrointestinal tract harbors a complex ecosystem consisting of countless bacteria in homeostasis with the host immune system. Shaped by evolution, this partnership has potential for symbiotic benefit. However, the identities of bacterial molecules mediating symbiosis remain undefined. Here we show that, during colonization of animals with the ubiquitous gut microorganism Bacteroides fragilis, a bacterial polysaccharide (PSA) directs the cellular and physical maturation of the developing immune system. Comparison with germ-free animals reveals that the immunomodulatory activities of PSA during B. fragilis colonization include correcting systemic T cell deficiencies and T(H)1/T(H)2 imbalances and directing lymphoid organogenesis. A PSA mutant of B. fragilis does not restore these immunologic functions. PSA presented by intestinal dendritic cells activates CD4+ T cells and elicits appropriate cytokine production. These findings provide a molecular basis for host-bacterial symbiosis and reveal the archetypal molecule of commensal bacteria that mediates development of the host immune system.
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              16S ribosomal DNA amplification for phylogenetic study.

              A set of oligonucleotide primers capable of initiating enzymatic amplification (polymerase chain reaction) on a phylogenetically and taxonomically wide range of bacteria is described along with methods for their use and examples. One pair of primers is capable of amplifying nearly full-length 16S ribosomal DNA (rDNA) from many bacterial genera; the additional primers are useful for various exceptional sequences. Methods for purification of amplified material, direct sequencing, cloning, sequencing, and transcription are outlined. An obligate intracellular parasite of bovine erythrocytes, Anaplasma marginale, is used as an example; its 16S rDNA was amplified, cloned, sequenced, and phylogenetically placed. Anaplasmas are related to the genera Rickettsia and Ehrlichia. In addition, 16S rDNAs from several species were readily amplified from material found in lyophilized ampoules from the American Type Culture Collection. By use of this method, the phylogenetic study of extremely fastidious or highly pathogenic bacterial species can be carried out without the need to culture them. In theory, any gene segment for which polymerase chain reaction primer design is possible can be derived from a readily obtainable lyophilized bacterial culture.
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                Author and article information

                Contributors
                Role: Reviewing editor
                Journal
                eLife
                elife
                elife
                eLife
                eLife
                eLife Sciences Publications, Ltd
                2050-084X
                15 October 2012
                2012
                : 1
                : e00013
                Affiliations
                [1 ]Department of Molecular and Cell Biology, University of California, Berkeley , Berkeley, United States
                [2 ]Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School , Boston, United States
                [3 ]Department of Biochemistry, Stanford University School of Medicine , Stanford, United States
                University of Washington , United States
                University of Washington , United States
                Author notes
                [* ]For correspondence: jon_clardy@ 123456hms.harvard.edu (JC);
                [* ]For correspondence: nking@ 123456berkeley.edu (NK)
                [†]

                These authors contributed equally to this work.

                Article
                00013
                10.7554/eLife.00013
                3463246
                23066504
                2b5c7ab3-6b9d-46c2-ac08-a432af97bab3
                Copyright © 2012, Alegado et al

                This article is distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use and redistribution provided that the original author and source are credited.

                History
                : 22 May 2012
                : 18 July 2012
                Funding
                Funded by: Gordon and Betty Moore Foundation Marine Microbiology Initiative
                Award Recipient :
                Funded by: National Institutes of Health
                Award ID: F32 GM086054
                Award Recipient :
                Funded by: National Institutes of Health
                Award ID: F32 GM089018
                Award Recipient :
                Funded by: National Institutes of Health
                Award ID: R01 GM086258
                Award Recipient :
                Funded by: National Institutes of Health
                Award ID: R01 GM099533
                Award Recipient :
                Funded by: National Institutes of Health
                Award ID: T32 HG00047
                Award Recipient :
                The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.
                Categories
                Research Article
                Cell Biology
                Custom metadata
                0.1
                The development of colonies of cells in choanoflagellates, water-dwelling organisms that feed on bacteria, is triggered by the presence of very low concentrations of a lipid molecule produced by certain types of bacteria.

                Life sciences
                salpingoeca rosetta,algoriphagus,bacterial sulfonolipid,multicellular development,other

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