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      A family of membrane-shaping proteins at ER subdomains regulates pre-peroxisomal vesicle biogenesis

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          Abstract

          Joshi et al. show that Pex30p and Pex31p contain reticulon-like ER tubulating domains. Like reticulons, they localize to the edges of ER sheets and tubules but are only present in subdomains. These subdomains are devoid of reticulons and are the sites of pre-peroxisome vesicle biogenesis.

          Abstract

          Saccharomyces cerevisiae contains three conserved reticulon and reticulon-like proteins that help maintain ER structure by stabilizing high membrane curvature in ER tubules and the edges of ER sheets. A mutant lacking all three proteins has dramatically altered ER morphology. We found that ER shape is restored in this mutant when Pex30p or its homologue Pex31p is overexpressed. Pex30p can tubulate membranes both in cells and when reconstituted into proteoliposomes, indicating that Pex30p is a novel ER-shaping protein. In contrast to the reticulons, Pex30p is low abundance, and we found that it localizes to subdomains in the ER. We show that these ER subdomains are the sites where most preperoxisomal vesicles (PPVs) are generated. In addition, overproduction or deletion of Pex30p or Pex31p alters the size, shape, and number of PPVs. Our findings suggest that Pex30p and Pex31p help shape and generate regions of the ER where PPV biogenesis occurs.

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          A class of membrane proteins shaping the tubular endoplasmic reticulum.

          How is the characteristic shape of a membrane bound organelle achieved? We have used an in vitro system to address the mechanism by which the tubular network of the endoplasmic reticulum (ER) is generated and maintained. Based on the inhibitory effect of sulfhydryl reagents and antibodies, network formation in vitro requires the integral membrane protein Rtn4a/NogoA, a member of the ubiquitous reticulon family. Both in yeast and mammalian cells, the reticulons are largely restricted to the tubular ER and are excluded from the continuous sheets of the nuclear envelope and peripheral ER. Upon overexpression, the reticulons form tubular membrane structures. The reticulons interact with DP1/Yop1p, a conserved integral membrane protein that also localizes to the tubular ER. These proteins share an unusual hairpin topology in the membrane. The simultaneous absence of the reticulons and Yop1p in S. cerevisiae results in disrupted tubular ER. We propose that these "morphogenic" proteins partition into and stabilize highly curved ER membrane tubules.
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            Phosphorus assay in column chromatography.

            G BARTLETT (1959)
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              Mechanisms determining the morphology of the peripheral ER.

              The endoplasmic reticulum (ER) consists of the nuclear envelope and a peripheral network of tubules and membrane sheets. The tubules are shaped by the curvature-stabilizing proteins reticulons and DP1/Yop1p, but how the sheets are formed is unclear. Here, we identify several sheet-enriched membrane proteins in the mammalian ER, including proteins that translocate and modify newly synthesized polypeptides, as well as coiled-coil membrane proteins that are highly upregulated in cells with proliferated ER sheets, all of which are localized by membrane-bound polysomes. These results indicate that sheets and tubules correspond to rough and smooth ER, respectively. One of the coiled-coil proteins, Climp63, serves as a "luminal ER spacer" and forms sheets when overexpressed. More universally, however, sheet formation appears to involve the reticulons and DP1/Yop1p, which localize to sheet edges and whose abundance determines the ratio of sheets to tubules. These proteins may generate sheets by stabilizing the high curvature of edges. Copyright © 2010 Elsevier Inc. All rights reserved.
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                Author and article information

                Journal
                J Cell Biol
                J. Cell Biol
                jcb
                jcb
                The Journal of Cell Biology
                The Rockefeller University Press
                0021-9525
                1540-8140
                21 November 2016
                : 215
                : 4
                : 515-529
                Affiliations
                [1 ]Laboratory of Cell and Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892
                [2 ]Department of Genetics and Cell Biology, College of Life Sciences, Nankai University, Tianjin 300071, China
                [3 ]Tianjin Key Laboratory of Protein Science, Nankai University, Tianjin 300071, China
                [4 ]University College London Institute of Ophthalmology, London EC1V 9EL, England, UK
                [5 ]National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China
                Author notes
                Correspondence to William A. Prinz: prinzw@ 123456helix.nih.gov
                Author information
                http://orcid.org/0000-0003-4712-2243
                http://orcid.org/0000-0002-9053-2398
                Article
                201602064
                10.1083/jcb.201602064
                5119935
                27872254
                2bd16184-2e5e-45b1-8b1c-601b35325142

                This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 3.0 Unported license, as described at http://creativecommons.org/licenses/by-nc-sa/3.0/).

                History
                : 17 February 2016
                : 29 July 2016
                : 21 October 2016
                Funding
                Funded by: National Institute of Diabetes and Digestive and Kidney Diseases https://doi.org/10.13039/100000062
                Funded by: National Natural Science Foundation of China https://doi.org/10.13039/501100001809
                Award ID: 31225006
                Funded by: Howard Hughes Medical Institute https://doi.org/10.13039/100000011
                Funded by: Biotechnology and Biological Sciences Research Council https://doi.org/10.13039/501100000268
                Award ID: BB/M011801
                Funded by: Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung https://doi.org/10.13039/501100001711
                Award ID: PA00P3_145358
                Award ID: P300P3_158454
                Categories
                Research Articles
                Article
                19

                Cell biology
                Cell biology

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