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      Species of Philometra (Nematoda, Philometridae) from fishes off the Mediterranean coast of Africa, with a description of Philometra rara n. sp. from Hyporthodus haifensis and a molecular analysis of Philometra saltatrix from Pomatomus saltatrix Translated title: Espèces de Philometra (Nematoda, Philometridae) parasites de poissons en Méditerranée au large de l’Afrique, avec une description de Philometra rara n. sp. de Hyporthodus haifensis et une analyse moléculaire de Philometra saltatrix de Pomatomus saltatrix

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      Parasite
      EDP Sciences
      Parasitic nematode, Taxonomy, Dracunculoidea, Mediterranean Sea, Libya, Tunisia, COI, Barcoding

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          Abstract

          Two gonad-infecting species of Philometra Costa, 1845 (Nematoda, Philometridae) were recorded for the first time from marine perciform fishes off Tunisia and Libya: Philometra rara n. sp. from the rare, deep-water Haifa grouper Hyporthodus haifensis (Serranidae) off Libya and Philometra saltatrix Ramachandran, 1973 from the bluefish Pomatomus saltatrix (Pomatomidae) off Tunisia. Identification of both fish species was confirmed by molecular barcoding. Light and scanning electron microscope studies of Ph. rara n. sp. showed that it is characterized by the length of spicules (216–219 μm) and the gubernaculum (90–93 μm), the gubernaculum/spicules length ratio (1:2.32–2.43), and mainly by the shape and structure of the distal end of the gubernaculum (shovel-shaped with a wide median smooth field in dorsal view), appearing as having a dorsal protuberance in lateral view, and by the structure of the male caudal mound (dorsally interrupted); large subgravid females (70–137 mm long) are characterized by the presence of four oval submedian cephalic elevations, each of them bearing a pair of cephalic papillae of the outer circle. The finding of Ph. saltatrix off Tunisia confirms that this species is widespread throughout the Mediterranean region. A molecular analysis of our Ph. saltatrix specimens and other available philometrid cytochrome c oxidase 1 (COI) sequences showed that most species have robust clades. Sequences of Ph. saltatrix from Tunisia diverge from Ph. saltatrix from Brazil and the USA, suggesting that speciation is currently occurring between populations from both sides of the Atlantic Ocean.

          Translated abstract

          Deux espèces de Philometra Costa, 1845 (Nematoda, Philometridae) parasites des gonades sont, pour la première fois, signalées de poissons perciformes marins au large de la Tunisie et de la Libye : Philometra rara n. sp. (Serranidae) du mérou de Haïfa Hyporthodus haifensis, une espèce rare, au large de la Libye et Philometra saltatrix Ramachandran, 1973, du tassergal Pomatomus saltatrix (Pomatomidae) au large de la Tunisie. L’identification des deux espèces de poissons a été confirmée par barcode moléculaire. Des études en microscopie photonique et microscopie électronique à balayage de Ph. rara n. sp. ont montré que l’espèce se caractérise par la longueur des spicules (216-219 μm) et du gubernaculum (90-93 μm), le rapport gubernaculum/spicules (1: 2.32-2.43) et principalement par la forme et la structure de l’extrémité distale du gubernaculum (en forme de pelle avec un large champ médian lisse en vue dorsale), apparaissant comme ayant une protubérance dorsale en vue latérale, et par la structure du monticule caudal mâle (interrompu dorsalement); les grandes femelles subgravides (70-137 mm de long) se caractérisent par la présence de quatre élévations céphaliques ovales sous-médianes, chacune portant une paire de papilles céphaliques sur le cercle extérieur. La découverte de Ph. saltatrix au large de la Tunisie confirme que cette espèce est répandue dans la région méditerranéenne. Une analyse moléculaire de nos spécimens de Ph. saltatrix et d’autres séquences disponibles de COI de Philometridae montre que la plupart des espèces présentent des clades robustes. Les séquences de Ph. saltatrix en provenance de Tunisie divergent de Ph. saltatrix du Brésil et des États-Unis, ce qui suggère qu’une spéciation se produit actuellement entre les populations des deux côtés de l’océan Atlantique.

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          DNA Barcoding for Species Assignment: The Case of Mediterranean Marine Fishes

          Background DNA barcoding enhances the prospects for species-level identifications globally using a standardized and authenticated DNA-based approach. Reference libraries comprising validated DNA barcodes (COI) constitute robust datasets for testing query sequences, providing considerable utility to identify marine fish and other organisms. Here we test the feasibility of using DNA barcoding to assign species to tissue samples from fish collected in the central Mediterranean Sea, a major contributor to the European marine ichthyofaunal diversity. Methodology/Principal Findings A dataset of 1278 DNA barcodes, representing 218 marine fish species, was used to test the utility of DNA barcodes to assign species from query sequences. We tested query sequences against 1) a reference library of ranked DNA barcodes from the neighbouring North East Atlantic, and 2) the public databases BOLD and GenBank. In the first case, a reference library comprising DNA barcodes with reliability grades for 146 fish species was used as diagnostic dataset to screen 486 query DNA sequences from fish specimens collected in the central basin of the Mediterranean Sea. Of all query sequences suitable for comparisons 98% were unambiguously confirmed through complete match with reference DNA barcodes. In the second case, it was possible to assign species to 83% (BOLD-IDS) and 72% (GenBank) of the sequences from the Mediterranean. Relatively high intraspecific genetic distances were found in 7 species (2.2%–18.74%), most of them of high commercial relevance, suggesting possible cryptic species. Conclusion/Significance We emphasize the discriminatory power of COI barcodes and their application to cases requiring species level resolution starting from query sequences. Results highlight the value of public reference libraries of reliability grade-annotated DNA barcodes, to identify species from different geographical origins. The ability to assign species with high precision from DNA samples of disparate quality and origin has major utility in several fields, from fisheries and conservation programs to control of fish products authenticity.
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            Pseudorhabdosynochus sulamericanus (Monogenea, Diplectanidae), a parasite of deep-sea groupers (Serranidae) occurs transatlantically on three congeneric hosts (Hyporthodus spp.), one from the Mediterranean Sea and two from the western Atlantic

            Little is known of the diversity of the monogenean parasites infesting deep-sea groupers, and there is even less information available about their geographic distributions within the ranges of their hosts. To improve our understanding of these host-parasite relationships we conducted parasitological evaluations of the deep-water Haifa grouper Hyporthodus haifensis from the southern Mediterranean off Tunisia and Libya. We collected more than one species of diplectanid monogeneans from this host, but among these only one dominant species was abundant. This proved to be morphologically very similar to Pseudorhabdosynochus sulamericanus Santos, Buchmann & Gibson, 2000, a species originally described from the congeneric host H. niveatus off Brazil and also recorded from H. niveatus and H. nigritus off Florida. Here, we conducted a morphological comparison between newly collected specimens and those previously deposited in museum collections by other authors. Further, we used COI barcoding to ascertain the specific identity of the three host species to better elucidate the circumstances that might explain the unexpectedly broad distribution of P. sulamericanus. We assigned our specimens from H. haifensis to P. sulamericanus primarily on the basis of morphological characteristics of the sclerotized vagina. We also noted morphological characteristics of eastern and western Atlantic specimens that are not clearly described or not given in previous descriptions and so prepared a redescription of the species. We confirmed, by COI barcoding, that no sister-species relationships were evident among the three hosts of P. sulamericanus. Our observation that P. sulamericanus infects unrelated host species with putatively allopatric distributions was unexpected given the very limited dispersive capabilities and the high degree of host specificity common to members of Pseudorhabdosynochus. This transatlantic distribution raises questions with regard to phylogeography and assumptions about the allopatry of Atlantic grouper species from the Americas and Afro-Eurasia. Here, we propose some hypothetical explanations for our findings.
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              Philometrids (Nematoda: Philometridae) in carangid and serranid fishes off New Caledonia, including three new species

              A recent examination of newly obtained specimens of philometrid nematodes (Philometridae) parasitising carangid and serranid fishes off New Caledonia, South Pacific, revealed the presence of several nematodes of the genus Philometra Costa, 1845, including three new species: P. austropacifica n. sp. (males and females) from the ovary of Alepes vari (Carangidae), P. piscaria n. sp. (males) from the ovary of Epinephelus coioides (Serranidae), and P. selaris n. sp. (males) probably from the abdominal cavity (found in washings) of Selar crumenophthalmus (Carangidae). The new species are characterised mainly by the length and structure of the spicules and gubernaculum, body size, their location in the host and the type of host. Philometra austropacifica n. sp. is the first known nominal gonad-infecting species of Philometra parasitising a carangid fish. In addition, the gravid female of P. fasciati Moravec & Justine, 2008 from the ovary of Epinephelus fasciatus (Serranidae) is described for the first time. Carangid host fish were identified by both morphology and DNA barcoding.
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                Author and article information

                Journal
                Parasite
                Parasite
                parasite
                Parasite
                EDP Sciences
                1252-607X
                1776-1042
                2017
                10 March 2017
                : 24
                : ( publisher-idID: parasite/2017/01 )
                : 8
                Affiliations
                [1 ] Institute of Parasitology, Biology Centre of the Czech Academy of Sciences Branišovská 31 370 05 České Budějovice Czech Republic
                [2 ] Laboratoire de Biodiversité et Écosystèmes Aquatiques, Faculté des Sciences de Sfax (FSS), Université de Sfax BP 1171 3038 Sfax Tunisia
                [3 ] Service de Systématique moléculaire, UMS 2700 CNRS, Muséum National d’Histoire Naturelle, Sorbonne Universités CP 26, 43 rue Cuvier 75231 Paris Cedex 05 France
                [4 ] ISYEB, Institut Systématique, Évolution, Biodiversité, UMR7205 CNRS, EPHE, MNHN, UPMC, Muséum National d’Histoire Naturelle, Sorbonne Universités CP51, 55 rue Buffon 75231 Paris Cedex 05 France
                Author notes
                Article
                parasite170008 10.1051/parasite/2017008
                10.1051/parasite/2017008
                5364780
                28287390
                2d90dde7-3863-4d84-a2a0-00be4e6262c5
                © F. Moravec et al., published by EDP Sciences, 2017

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                : 18 January 2017
                : 24 February 2017
                Page count
                Figures: 5, Tables: 2, Equations: 0, References: 35, Pages: 12
                Categories
                Research Article

                parasitic nematode,taxonomy,dracunculoidea,mediterranean sea,libya,tunisia,coi,barcoding

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