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      De-Extinction

      review-article
      1 , 2 , 3
      Genes
      MDPI
      de-extinction, precise hybridization, evolutionarily torpid species, proxy, passenger pigeon, woolly mammoth, heath hen, revive & restore

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          Abstract

          De-extinction projects for species such as the woolly mammoth and passenger pigeon have greatly stimulated public and scientific interest, producing a large body of literature and much debate. To date, there has been little consistency in descriptions of de-extinction technologies and purposes. In 2016, a special committee of the International Union for the Conservation of Nature (IUCN) published a set of guidelines for de-extinction practice, establishing the first detailed description of de-extinction; yet incoherencies in published literature persist. There are even several problems with the IUCN definition. Here I present a comprehensive definition of de-extinction practice and rationale that expounds and reconciles the biological and ecological inconsistencies in the IUCN definition. This new definition brings together the practices of reintroduction and ecological replacement with de-extinction efforts that employ breeding strategies to recover unique extinct phenotypes into a single “de-extinction” discipline. An accurate understanding of de-extinction and biotechnology segregates the restoration of certain species into a new classification of endangerment, removing them from the purview of de-extinction and into the arena of species’ recovery. I term these species as “evolutionarily torpid species”; a term to apply to species falsely considered extinct, which in fact persist in the form of cryopreserved tissues and cultured cells. For the first time in published literature, all currently active de-extinction breeding programs are reviewed and their progress presented. Lastly, I review and scrutinize various topics pertaining to de-extinction in light of the growing body of peer-reviewed literature published since de-extinction breeding programs gained public attention in 2013.

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          Most cited references163

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          A high-coverage genome sequence from an archaic Denisovan individual.

          We present a DNA library preparation method that has allowed us to reconstruct a high-coverage (30×) genome sequence of a Denisovan, an extinct relative of Neandertals. The quality of this genome allows a direct estimation of Denisovan heterozygosity indicating that genetic diversity in these archaic hominins was extremely low. It also allows tentative dating of the specimen on the basis of "missing evolution" in its genome, detailed measurements of Denisovan and Neandertal admixture into present-day human populations, and the generation of a near-complete catalog of genetic changes that swept to high frequency in modern humans since their divergence from Denisovans.
            • Record: found
            • Abstract: found
            • Article: not found

            Targeting DNA double-strand breaks with TAL effector nucleases.

            Engineered nucleases that cleave specific DNA sequences in vivo are valuable reagents for targeted mutagenesis. Here we report a new class of sequence-specific nucleases created by fusing transcription activator-like effectors (TALEs) to the catalytic domain of the FokI endonuclease. Both native and custom TALE-nuclease fusions direct DNA double-strand breaks to specific, targeted sites.
              • Record: found
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              Challenges in the Quest for Keystones

                Author and article information

                Journal
                Genes (Basel)
                Genes (Basel)
                genes
                Genes
                MDPI
                2073-4425
                13 November 2018
                November 2018
                : 9
                : 11
                : 548
                Affiliations
                [1 ]Revive & Restore, Sausalito, CA 94965, USA; ben@ 123456reviverestore.org ; Tel.: +1-415-289-1000
                [2 ]Department of Anatomy and Developmental Biology, Monash University, Clayton, Victoria 3800, Australia
                [3 ]Australian Animal Health Laboratory, Commonwealth Scientific and Industrial Research Organization, Newcomb, Victoria 3220, Australia
                Article
                genes-09-00548
                10.3390/genes9110548
                6265789
                30428542
                30987124-3929-467f-8629-385d7fab88ad
                © 2018 by the author.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 26 September 2018
                : 07 November 2018
                Categories
                Review

                de-extinction,precise hybridization,evolutionarily torpid species,proxy,passenger pigeon,woolly mammoth,heath hen,revive & restore

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