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      DTL promotes cancer progression by PDCD4 ubiquitin-dependent degradation

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          Abstract

          Background

          Ubiquitin E3 ligase CUL4A plays important oncogenic roles in the development of cancers. DTL, one of the CUL4-DDB1 associated factors (DCAFs), may involve in the process of cancer development. Programmed cell death 4 (PDCD4) is a tumor suppressor gene involved in cell apoptosis, transformation, invasion and tumor progression.

          Methods

          Affinity-purification mass spectrometry was used to identify potential DTL interaction proteins. Co-immunoprecipitation (Co-IP) was performed to verify protein interaction between DTL and PDCD4. mRNA levels in cancer cells and tissues were detected by Quantitative real-time PCR. Lentivirus was used to establish stable overexpression and knocking down cell lines for DTL and PDCD4. Transwell and wound healing assays were used to determine migration ability of cancer cells. Matrigel assay was used to determine invasion ability of cancer cells. MTT and colony formation assays were used to evaluate proliferation of cancer cells.

          Results

          In this study, programmed cell death 4 (PDCD4) was identified as a potential substrate of DTL. Co-IP and immunofluorescence assays further confirmed the interaction between DTL and PDCD4. Moreover, DTL overexpression decreased the protein level and accelerated the degradation rate of PDCD4. Through in vitro ubiquitination experiment, we proved that PDCD4 was degraded by DTL through ubiquitination. Clinically DTL was significantly up-regulated in cancer tissues than that in normal tissues. The survival curves showed that cancer patients with higher DTL expression owned lower survival rate. Functional experiments showed that DTL not only enhanced the proliferation and migration abilities of cancer cells, but also promoted the tumorigenesis in nude mice. Rescued experiment results demonstrated that silencing PDCD4 simultaneous with DTL recovered the phenotypes defect caused by DTL knocking down.

          Conclusions

          Our results elucidated that DTL enhanced the motility and proliferation of cancer cells through degrading PDCD4 to promote the development of cancers.

          Electronic supplementary material

          The online version of this article (10.1186/s13046-019-1358-x) contains supplementary material, which is available to authorized users.

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          Most cited references37

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          miRpower: a web-tool to validate survival-associated miRNAs utilizing expression data from 2178 breast cancer patients.

          The proper validation of prognostic biomarkers is an important clinical issue in breast cancer research. MicroRNAs (miRNAs) have emerged as a new class of promising breast cancer biomarkers. In the present work, we developed an integrated online bioinformatic tool to validate the prognostic relevance of miRNAs in breast cancer.
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            DNA replication in eukaryotic cells.

            The maintenance of the eukaryotic genome requires precisely coordinated replication of the entire genome each time a cell divides. To achieve this coordination, eukaryotic cells use an ordered series of steps to form several key protein assemblies at origins of replication. Recent studies have identified many of the protein components of these complexes and the time during the cell cycle they assemble at the origin. Interestingly, despite distinct differences in origin structure, the identity and order of assembly of eukaryotic replication factors is highly conserved across all species. This review describes our current understanding of these events and how they are coordinated with cell cycle progression. We focus on bringing together the results from different organisms to provide a coherent model of the events of initiation. We emphasize recent progress in determining the function of the different replication factors once they have been assembled at the origin.
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              COFACTOR: an accurate comparative algorithm for structure-based protein function annotation

              We have developed a new COFACTOR webserver for automated structure-based protein function annotation. Starting from a structural model, given by either experimental determination or computational modeling, COFACTOR first identifies template proteins of similar folds and functional sites by threading the target structure through three representative template libraries that have known protein–ligand binding interactions, Enzyme Commission number or Gene Ontology terms. The biological function insights in these three aspects are then deduced from the functional templates, the confidence of which is evaluated by a scoring function that combines both global and local structural similarities. The algorithm has been extensively benchmarked by large-scale benchmarking tests and demonstrated significant advantages compared to traditional sequence-based methods. In the recent community-wide CASP9 experiment, COFACTOR was ranked as the best method for protein–ligand binding site predictions. The COFACTOR sever and the template libraries are freely available at http://zhanglab.ccmb.med.umich.edu/COFACTOR.
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                Author and article information

                Contributors
                cuihr1027@163.com
                wangqin8207@163.com
                fcsxLZC@163.com
                fengmaoxiao@126.com
                zxzhao@sdu.edu.cn
                wangyunshan135@126.com
                gwwei@yahoo.com
                Journal
                J Exp Clin Cancer Res
                J. Exp. Clin. Cancer Res
                Journal of Experimental & Clinical Cancer Research : CR
                BioMed Central (London )
                0392-9078
                1756-9966
                13 August 2019
                13 August 2019
                2019
                : 38
                : 350
                Affiliations
                [1 ]ISNI 0000 0004 1761 1174, GRID grid.27255.37, Department of Cell Biology and Key Laboratory of Experimental Teratology, Ministry of Education, , Shandong University School of Medicine, ; Jinan, Shandong China
                [2 ]ISNI 0000 0004 1761 1174, GRID grid.27255.37, Department of Anesthesiology, Qilu Hospital, , Shandong University, ; Jinan, Shandong China
                [3 ]ISNI 0000 0001 2152 3263, GRID grid.4422.0, College of Marine Life Sciences, , Ocean University of China, ; Qingdao, Shandong China
                [4 ]ISNI 0000 0004 1761 1174, GRID grid.27255.37, School of Pharmaceutical Sciences, , Shandong University, ; No. 44 West Wenhua Road, Jinan, Shandong China
                [5 ]GRID grid.452704.0, Department of Clinical Laboratory, , The Second Hospital of Shandong University, ; Jinan, Shandong China
                Article
                1358
                10.1186/s13046-019-1358-x
                6693180
                31409387
                312a1063-b7a1-43c7-978f-0d8677330de8
                © The Author(s). 2019

                Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

                History
                : 4 May 2019
                : 6 August 2019
                Funding
                Funded by: National Natural Science Foundation of China
                Award ID: 81872148
                Award ID: 81874040
                Award Recipient :
                Funded by: National Key R&D Program of China
                Award ID: 2017YFC1308600
                Award Recipient :
                Categories
                Research
                Custom metadata
                © The Author(s) 2019

                Oncology & Radiotherapy
                dtl,cul4a,pdcd4,cancer development
                Oncology & Radiotherapy
                dtl, cul4a, pdcd4, cancer development

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