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      ConR: An R package to assist large‐scale multispecies preliminary conservation assessments using distribution data

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          Abstract

          The Red List Categories and the accompanying five criteria developed by the International Union for Conservation of Nature ( IUCN) provide an authoritative and comprehensive methodology to assess the conservation status of organisms. Red List criterion B, which principally uses distribution data, is the most widely used to assess conservation status, particularly of plant species. No software package has previously been available to perform large‐scale multispecies calculations of the three main criterion B parameters [extent of occurrence ( EOO), area of occupancy ( AOO) and an estimate of the number of locations] and provide preliminary conservation assessments using an automated batch process. We developed ConR, a dedicated R package, as a rapid and efficient tool to conduct large numbers of preliminary assessments, thereby facilitating complete Red List assessment. ConR (1) calculates key geographic range parameters ( AOO and EOO) and estimates the number of locations sensu IUCN needed for an assessment under criterion B; (2) uses this information in a batch process to generate preliminary assessments of multiple species; (3) summarize the parameters and preliminary assessments in a spreadsheet; and (4) provides a visualization of the results by generating maps suitable for the submission of full assessments to the IUCN Red List. ConR can be used for any living organism for which reliable georeferenced distribution data are available. As distributional data for taxa become increasingly available via large open access datasets, ConR provides a novel, timely tool to guide and accelerate the work of the conservation and taxonomic communities by enabling practitioners to conduct preliminary assessments simultaneously for hundreds or even thousands of species in an efficient and time‐saving way.

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          Most cited references15

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          Supporting Red List threat assessments with GeoCAT: geospatial conservation assessment tool

          Abstract GeoCAT is an open source, browser based tool that performs rapid geospatial analysis to ease the process of Red Listing taxa. Developed to utilise spatially referenced primary occurrence data, the analysis focuses on two aspects of the geographic range of a taxon: the extent of occurrence (EOO) and the area of occupancy (AOO). These metrics form part of the IUCN Red List categories and criteria and have often proved challenging to obtain in an accurate, consistent and repeatable way. Within a familiar Google Maps environment, GeoCAT users can quickly and easily combine data from multiple sources such as GBIF, Flickr and Scratchpads as well as user generated occurrence data. Analysis is done with the click of a button and is visualised instantly, providing an indication of the Red List threat rating, subject to meeting the full requirements of the criteria. Outputs including the results, data and parameters used for analysis are stored in a GeoCAT file that can be easily reloaded or shared with collaborators. GeoCAT is a first step toward automating the data handling process of Red List assessing and provides a valuable hub from which further developments and enhancements can be spawned.
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            Catastrophic Declines in Wilderness Areas Undermine Global Environment Targets.

            Humans have altered terrestrial ecosystems for millennia [1], yet wilderness areas still remain as vital refugia where natural ecological and evolutionary processes operate with minimal human disturbance [2-4], underpinning key regional- and planetary-scale functions [5, 6]. Despite the myriad values of wilderness areas-as critical strongholds for endangered biodiversity [7], for carbon storage and sequestration [8], for buffering and regulating local climates [9], and for supporting many of the world's most politically and economically marginalized communities [10]-they are almost entirely ignored in multilateral environmental agreements. This is because they are assumed to be relatively free from threatening processes and therefore are not a priority for conservation efforts [11, 12]. Here we challenge this assertion using new comparable maps of global wilderness following methods established in the original "last of the wild" analysis [13] to examine the change in extent since the early 1990s. We demonstrate alarming losses comprising one-tenth (3.3 million km(2)) of global wilderness areas over the last two decades, particularly in the Amazon (30%) and central Africa (14%). We assess increases in the protection of wilderness over the same time frame and show that these efforts are failing to keep pace with the rate of wilderness loss, which is nearly double the rate of protection. Our findings underscore an immediate need for international policies to recognize the vital values of wilderness and the unprecedented threats they face and to underscore urgent large-scale, multifaceted actions needed to maintain them.
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              Estimating the global conservation status of more than 15,000 Amazonian tree species

              Analyses of forest loss and protected areas suggest that 36 to 57% of Amazonian tree flora may qualify as “globally threatened.”
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                Author and article information

                Contributors
                gildauby@gmail.com
                Journal
                Ecol Evol
                Ecol Evol
                10.1002/(ISSN)2045-7758
                ECE3
                Ecology and Evolution
                John Wiley and Sons Inc. (Hoboken )
                2045-7758
                16 December 2017
                December 2017
                : 7
                : 24 ( doiID: 10.1002/ece3.2017.7.issue-24 )
                : 11292-11303
                Affiliations
                [ 1 ] Institut de Recherche pour le Développement (IRD) Université Montpellier, UMR DIADE Montpellier France
                [ 2 ] Evolutionary Biology and Ecology Unit Faculté des Sciences Université Libre de Bruxelles Bruxelles Belgium
                [ 3 ] French Foundation for Research on Biodiversity (FRB) through its Center for Synthesis and Analysis of Biodiversity data (CESAB) program Domaine du Petit Arbois Aix‐en‐Provence France
                [ 4 ] Africa and Madagascar Department Missouri Botanical Garden St. Louis MO USA
                [ 5 ] Botanic Garden Meise Meise Belgium
                [ 6 ] Herbarium et Bibliothèque de Botanique Africaine Faculté des Sciences, Université Libre de Bruxelles Bruxelles Belgium
                [ 7 ] Institut de Recherche pour le Développement (IRD) UMR AMAP Montpellier France
                [ 8 ] Plant Systematics and Ecology Laboratory Higher Teachers Training College University of Yaoundé I Yaoundé Cameroon
                [ 9 ] Center for Tropical Research Institute of the Environment and Sustainability University of California Los Angeles CA USA
                [ 10 ] International Institute of Tropical Agriculture Yaoundé Cameroon
                [ 11 ] Institut de Systématique Évolution et Biodiversité (ISYEB) Unité Mixte de Recherche 7205 (Centre National de la Recherche Scientifique/Muséum National d'Histoire Naturelle/École Pratique des Hautes Études/Université Pierre et Marie Curie) Muséum national d'Histoire naturelle Sorbonne Universités Paris France
                Author notes
                [*] [* ] Correspondence

                Gilles Dauby, Institut de Recherche pour le Développement (IRD), Université Montpellier, UMR DIADE, Montpellier, France.

                Email: gildauby@ 123456gmail.com

                [†]

                These authors contributed equally.

                Author information
                http://orcid.org/0000-0002-9498-413X
                Article
                ECE33704
                10.1002/ece3.3704
                5743656
                29299301
                329aa227-c208-4259-8832-9f81c1e3dab4
                © 2017 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 12 June 2017
                : 26 September 2017
                : 08 November 2017
                Page count
                Figures: 2, Tables: 3, Pages: 12, Words: 8673
                Funding
                Funded by: CEntre de synthèse et d'analyse sur la biodiversité (CESAB)
                Funded by: Fondation pour la Recherche sur la Biodiversité (FRB)
                Funded by: Agropolis Fondation (France)
                Award ID: 1403‐026
                Funded by: Agence Nationale de la Recherche
                Award ID: ANR‐15‐ CE02‐0002‐01
                Funded by: Belgian Fund for Scientific Research
                Categories
                Original Research
                Original Research
                Custom metadata
                2.0
                ece33704
                December 2017
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.2.8 mode:remove_FC converted:26.12.2017

                Evolutionary Biology
                area of occupancy,criterion b,distribution range,extent of occurrence,iucn,location,preliminary status,threatened taxa

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