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      Virus hazards from food, water and other contaminated environments

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      -0001 , -0002 , -0003 , -0004 , -0005 , -0005 , -0006 , -0002 , -0007 , -0008 , -0009 , -0010 , -0010 , -0011 , -0002 , -0001 , -0001 , -0012 , -0013 , -0014 , -0001 , -0015 , -0016
      FEMS Microbiology Reviews
      Blackwell Publishing Ltd
      food borne virus, faecal-oral transmission, nonenveloped virus, gastroenteritis, hepatitis molecular detection

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          Abstract

          Numerous viruses of human or animal origin can spread in the environment and infect people via water and food, mostly through ingestion and occasionally through skin contact. These viruses are released into the environment by various routes including water run-offs and aerosols. Furthermore, zoonotic viruses may infect humans exposed to contaminated surface waters. Foodstuffs of animal origin can be contaminated, and their consumption may cause human infection if the viruses are not inactivated during food processing. Molecular epidemiology and surveillance of environmental samples are necessary to elucidate the public health hazards associated with exposure to environmental viruses. Whereas monitoring of viral nucleic acids by PCR methods is relatively straightforward and well documented, detection of infectious virus particles is technically more demanding and not always possible (e.g. human norovirus or hepatitis E virus). The human pathogenic viruses that are most relevant in this context are nonenveloped and belong to the families of the Caliciviridae, Adenoviridae, Hepeviridae, Picornaviridae and Reoviridae. Sampling methods and strategies, first-choice detection methods and evaluation criteria are reviewed.

          Abstract

          Virus hazards from food, water and the environment, their reservoirs and routes of transmission; Sampling methods and sampling strategies thereof, including the first choice test methods, and criteria for data evaluation are described.

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          Most cited references288

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          Is Open Access

          Rotavirus and Severe Childhood Diarrhea

          Studies published between 1986 and 1999 indicated that rotavirus causes ≈22% (range 17%–28%) of childhood diarrhea hospitalizations. From 2000 to 2004, this proportion increased to 39% (range 29%–45%). Application of this proportion to the recent World Health Organization estimates of diarrhea-related childhood deaths gave an estimated 611,000 (range 454,000–705,000) rotavirus-related deaths.
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            Noroviruses: a comprehensive review.

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              Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments.

              Recently, a classification system was proposed for rotaviruses in which all the 11 genomic RNA segments are used (Matthijnssens et al. in J Virol 82:3204-3219, 2008). Based on nucleotide identity cut-off percentages, different genotypes were defined for each genome segment. A nomenclature for the comparison of complete rotavirus genomes was considered in which the notations Gx-P[x]-Ix-Rx-Cx-Mx-Ax-Nx-Tx-Ex-Hx are used for the VP7-VP4-VP6-VP1-VP2-VP3-NSP1-NSP2-NSP3-NSP4-NSP5/6 encoding genes, respectively. This classification system is an extension of the previously applied genotype-based system which made use of the rotavirus gene segments encoding VP4, VP7, VP6, and NSP4. In order to assign rotavirus strains to one of the established genotypes or a new genotype, a standard procedure is proposed in this report. As more human and animal rotavirus genomes will be completely sequenced, new genotypes for each of the 11 gene segments may be identified. A Rotavirus Classification Working Group (RCWG) including specialists in molecular virology, infectious diseases, epidemiology, and public health was formed, which can assist in the appropriate delineation of new genotypes, thus avoiding duplications and helping minimize errors. Scientists discovering a potentially new rotavirus genotype for any of the 11 gene segments are invited to send the novel sequence to the RCWG, where the sequence will be analyzed, and a new nomenclature will be advised as appropriate. The RCWG will update the list of classified strains regularly and make this accessible on a website. Close collaboration with the Study Group Reoviridae of the International Committee on the Taxonomy of Viruses will be maintained.
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                Author and article information

                Journal
                FEMS Microbiol Rev
                FEMS Microbiol. Rev
                femsre
                femsre
                FEMS Microbiology Reviews
                Blackwell Publishing Ltd (Oxford, UK )
                0168-6445
                1574-6976
                July 2012
                01 July 2012
                01 July 2012
                : 36
                : 4
                : 786-814
                Affiliations
                [-0001 ]Instituto Tecnológico Agrario de Castilla y León (ITACyL), Valladolid, Spain
                [-0002 ]The Food and Environmental Research Agency (FERA), York, UK
                [-0003 ]Istituto Superiore di Sanità, Rome, Italy
                [-0004 ]British Standards Institute, Reading, UK
                [-0005 ]Beit-berl Academic College, Beit-berl, Israel
                [-0006 ]University of Porto, Porto, Portugal
                [-0007 ]Instituto Superior Tecnico, Lisbon, Portugal
                [-0008 ]Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria, Madrid, Spain
                [-0009 ]National Veterinary Research Institute, Pulawy, Poland
                [-0010 ]University of Barcelona, Barcelona, Spain
                [-0011 ]University of Pisa, Pisa, Italy
                [-0012 ]University of Patras, Patras, Greece
                [-0013 ]University of Helsinki, Helsinki, Finland
                [-0014 ]Centre for Infectious Disease Control Netherlands, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands
                [-0015 ]Central Veterinary Institute, Wageningen University and Research Centre, Lelystad, The Netherlands
                [-0016 ]University of Liverpool, Liverpool, UK
                Author notes
                [*] Correspondence: Wim H.M. van der Poel, Department of Virology, Emerging and Zoonotic Viruses, Central Veterinary Institute, Wageningen University Research and Research Centre, PO Box 65, 8200 AB Lelystad, The Netherlands. Tel.: +31 320 238 383; fax: +31 320 238 961; e-mail: wim.vanderPoel@ 123456wur.nl
                Article
                10.1111/j.1574-6976.2011.00306.x
                7114518
                22091646
                3484f167-3e1f-420c-a476-0ceaf78eac9f
                © 2011 Federation of European Microbiological Societies.

                This article is made available via the PMC Open Access Subset for unrestricted re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the COVID-19 pandemic or until permissions are revoked in writing. Upon expiration of these permissions, PMC is granted a perpetual license to make this article available via PMC and Europe PMC, consistent with existing copyright protections.

                History
                : 06 May 2011
                : 30 August 2011
                Page count
                Pages: 29
                Categories
                Review Articles

                Microbiology & Virology
                food borne virus,faecal-oral transmission,nonenveloped virus,gastroenteritis,hepatitis molecular detection

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