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      Western Bluetongue virus serotype 3 in Sardinia, diagnosis and characterization

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          Abstract

          Over the last 20 years, Italy has experienced multiple incursions of different serotypes of Bluetongue virus ( BTV), a Culicoides‐borne arbovirus, the causative agent of bluetongue ( BT), a major disease of ruminants. The majority of these incursions originated from Northern Africa, likely because of wind‐blown dissemination of infected midges. Here, we report the first identification of BTV‐3 in Sardinia, Italy. BTV‐3 circulation was evidenced in sentinel animals located in the province of Sud Sardegna on September 19, 2018. Prototype strain BTV‐3 SAR2018 was isolated on cell culture. BTV‐3 SAR2018 sequence and partial sequences obtained by next‐generation sequencing from nucleic acids purified from the isolate and blood samples, respectively, were demonstrated to be almost identical (99–100% of nucleotide identity) to BTV‐3 TUN2016 identified in Tunisia in 2016 and 2017, a scenario already observed in past incursions of other BTV serotypes originating from Northern Africa.

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          Most cited references13

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          Cloning of a human parvovirus by molecular screening of respiratory tract samples.

          The identification of new virus species is a key issue for the study of infectious disease but is technically very difficult. We developed a system for large-scale molecular virus screening of clinical samples based on host DNA depletion, random PCR amplification, large-scale sequencing, and bioinformatics. The technology was applied to pooled human respiratory tract samples. The first experiments detected seven human virus species without the use of any specific reagent. Among the detected viruses were one coronavirus and one parvovirus, both of which were at that time uncharacterized. The parvovirus, provisionally named human bocavirus, was in a retrospective clinical study detected in 17 additional patients and associated with lower respiratory tract infections in children. The molecular virus screening procedure provides a general culture-independent solution to the problem of detecting unknown virus species in single or pooled samples. We suggest that a systematic exploration of the viruses that infect humans, "the human virome," can be initiated.
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            Sequence analysis of bluetongue virus serotype 8 from the Netherlands 2006 and comparison to other European strains.

            During 2006 the first outbreak of bluetongue ever recorded in northern Europe started in Belgium and the Netherlands, spreading to Luxemburg, Germany and north-east France. The virus overwintered (2006-2007) reappearing during May-June 2007 with greatly increased severity in affected areas, spreading further into Germany and France, reaching Denmark, Switzerland, the Czech Republic and the UK. Infected animals were also imported into Poland, Italy, Spain and the UK. An initial isolate from the Netherlands (NET2006/04) was identified as BTV-8 by RT-PCR assays targeting genome segment 2. The full genome of NET2006/04 was sequenced and compared to selected European isolates, South African vaccine strains and other BTV-8 strains, indicating that it originated in sub-Saharan Africa. Although NET2006/04 showed high levels of nucleotide identity with other 'western' BTV strains, it represents a new introduction and was not derived from the BTV-8 vaccine, although its route of entry into Europe has not been established.
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              Modelling the effects of past and future climate on the risk of bluetongue emergence in Europe

              Vector-borne diseases are among those most sensitive to climate because the ecology of vectors and the development rate of pathogens within them are highly dependent on environmental conditions. Bluetongue (BT), a recently emerged arboviral disease of ruminants in Europe, is often cited as an illustration of climate's impact on disease emergence, although no study has yet tested this association. Here, we develop a framework to quantitatively evaluate the effects of climate on BT's emergence in Europe by integrating high-resolution climate observations and model simulations within a mechanistic model of BT transmission risk. We demonstrate that a climate-driven model explains, in both space and time, many aspects of BT's recent emergence and spread, including the 2006 BT outbreak in northwest Europe which occurred in the year of highest projected risk since at least 1960. Furthermore, the model provides mechanistic insight into BT's emergence, suggesting that the drivers of emergence across Europe differ between the South and the North. Driven by simulated future climate from an ensemble of 11 regional climate models, the model projects increase in the future risk of BT emergence across most of Europe with uncertainty in rate but not in trend. The framework described here is adaptable and applicable to other diseases, where the link between climate and disease transmission risk can be quantified, permitting the evaluation of scale and uncertainty in climate change's impact on the future of such diseases.
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                Author and article information

                Contributors
                a.lorusso@izs.it
                Journal
                Transbound Emerg Dis
                Transbound Emerg Dis
                10.1111/(ISSN)1865-1682
                TBED
                Transboundary and Emerging Diseases
                John Wiley and Sons Inc. (Hoboken )
                1865-1674
                1865-1682
                19 March 2019
                May 2019
                : 66
                : 3 ( doiID: 10.1111/tbed.2019.66.issue-3 )
                : 1426-1431
                Affiliations
                [ 1 ] Istituto Zooprofilattico Sperimentale della Sardegna Cagliari Italy
                [ 2 ] OIE Reference Laboratory for Bluetongue Teramo Italy
                [ 3 ] Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise (IZSAM) National Reference Center for Whole Genome Sequencing of microbial Pathogens: Database and Bioinformatic Analysis Teramo Italy
                [ 4 ] Laboratoire de virologie Institut de la Recherche Vétérinaire de Tunisie (IRVT) Univérsité de Tunis El Manar Tunis Tunisia
                Author notes
                [*] [* ] Correspondence

                Alessio Lorusso, Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise (IZSAM), Teramo, Italy.

                Email: a.lorusso@ 123456izs.it

                Author information
                https://orcid.org/0000-0003-3045-3150
                https://orcid.org/0000-0001-6156-8212
                Article
                TBED13156
                10.1111/tbed.13156
                6850434
                30806040
                356ca7b2-0b2d-449a-ad5d-b02840e3ecd9
                © 2019 The Authors. Transboundary and Emerging Diseases published by Blackwell Verlag GmbH.

                This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 03 January 2019
                : 21 February 2019
                : 21 February 2019
                Page count
                Figures: 3, Tables: 0, Pages: 6, Words: 3823
                Funding
                Funded by: Horizon 2020 , open-funder-registry 10.13039/100010661;
                Categories
                Short Communication
                Short Communications
                Custom metadata
                2.0
                May 2019
                Converter:WILEY_ML3GV2_TO_JATSPMC version:5.7.1 mode:remove_FC converted:12.11.2019

                Infectious disease & Microbiology
                bluetongue virus serotype 3,characterization,diagnosis,next‐generation sequencing,sardinia

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