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      Titin truncating variants affect heart function in disease cohorts and the general population

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      1 , 2 , 3 , 4 , 2 , 1 , 2 , 2 , 4 , 1 , 2 , 5 , 5 , 5 , 3 , 2 , 1 , 1 , 1 , 2 , 5 , 5 , 4 , 6 , 7 , 6 , 3 , 1 , 8 , 4 , 4 , 9 , 15 , 10 , 10 , 11 , 12 , 13 , 14 , 2 , 3 , 3 , 5 , 4 , 15 , 16 , 2 , 1 , 5 ,
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          Abstract

          Titin truncating variants (TTNtv) commonly cause dilated cardiomyopathy (DCM). TTNtv are also encountered in ~1% of the general population where they may be silent, perhaps reflecting allelic factors. To better understand TTNtv we integrated TTN allelic series, cardiac imaging and genomic data in humans and studied rat models with disparate TTNtv. In patients with DCM, TTNtv throughout TTN were significantly associated with DCM. Ribosomal profiling in rat revealed the translational footprint of premature stop codons in Ttn, TTNtv position-independent nonsense-mediated degradation of the mutant allele and a signature of perturbed cardiac metabolism. Heart physiology in rats with TTNtv was unremarkable at baseline but became impaired during cardiac stress. In healthy humans, machine-based analysis of high-resolution cardiac scans showed TTNtv to be associated with eccentric cardiac remodelling. These data show that TTNtv have molecular and physiological effects on the heart across species, with a continuum of expressivity in health and disease.

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          Most cited references39

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            Is Open Access

            Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

            Increased reliance on computational approaches in the life sciences has revealed grave concerns about how accessible and reproducible computation-reliant results truly are. Galaxy http://usegalaxy.org, an open web-based platform for genomic research, addresses these problems. Galaxy automatically tracks and manages data provenance and provides support for capturing the context and intent of computational methods. Galaxy Pages are interactive, web-based documents that provide users with a medium to communicate a complete computational analysis.
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              RBM20, a gene for hereditary cardiomyopathy, regulates titin splicing.

              Alternative splicing has a major role in cardiac adaptive responses, as exemplified by the isoform switch of the sarcomeric protein titin, which adjusts ventricular filling. By positional cloning using a previously characterized rat strain with altered titin mRNA splicing, we identified a loss-of-function mutation in the gene encoding RNA binding motif protein 20 (Rbm20) as the underlying cause of pathological titin isoform expression. The phenotype of Rbm20-deficient rats resembled the pathology seen in individuals with dilated cardiomyopathy caused by RBM20 mutations. Deep sequencing of the human and rat cardiac transcriptome revealed an RBM20-dependent regulation of alternative splicing. In addition to titin (TTN), we identified a set of 30 genes with conserved splicing regulation between humans and rats. This network is enriched for genes that have previously been linked to cardiomyopathy, ion homeostasis and sarcomere biology. Our studies emphasize the key role of post-transcriptional regulation in cardiac function and provide mechanistic insights into the pathogenesis of human heart failure.
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                Author and article information

                Journal
                9216904
                2419
                Nat Genet
                Nat. Genet.
                Nature genetics
                1061-4036
                1546-1718
                14 November 2016
                21 November 2016
                January 2017
                21 May 2017
                : 49
                : 1
                : 46-53
                Affiliations
                [1 ]National Heart Centre Singapore, Singapore
                [2 ]Duke-National University of Singapore, Singapore
                [3 ]Medical Research Council Clinical Sciences Centre, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, Du Cane Road, London, W12 0HS, UK
                [4 ]Cardiovascular and Metabolic Sciences, Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), Robert-Rossle-Strasse 10, 13125 Berlin, Germany
                [5 ]National Heart and Lung Institute & NIHR Royal Brompton Cardiovascular BRU, Imperial College London, London, UK
                [6 ]Department of Surgery, National University of Singapore, Singapore
                [7 ]Departments of Cardiology and Vascular Surgery, University Medical Center, Utrecht, Netherlands
                [8 ]Department of Computing, Imperial College London, UK
                [9 ]Institute of Gender in Medicine, Charité Universitaetsmedizin Berlin, and German Center for Cardiovascular Research, Berlin, Germany
                [10 ]Department of Genetics, Harvard Medical School, Boston, MA 02115, USA
                [11 ]Division of Cardiovascular Medicine, Brigham and Women's Hospital, Boston, MA 02115, USA
                [12 ]Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA
                [13 ]Department of Cardiovascular Physiology, Ruhr University Bochum, Germany
                [14 ]DZHK (German Centre for Cardiovascular Research), partner site Goettingen, Germany
                [15 ]DZHK (German Centre for Cardiovascular Research), partner site Berlin, Germany
                [16 ]Charité-Universitätsmedizin, Berlin, Germany
                Author notes
                []corresponding author Stuart A Cook: stuart.cook@ 123456duke-nus.edu.sg
                [*]

                Co-first authors

                [**]

                Co-senior authors

                Article
                EMS70344
                10.1038/ng.3719
                5201198
                27869827
                36d028e9-9f7d-4c68-a8fe-58c0d0662703

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