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      Intergenerational Effects of Alcohol: A Review of Paternal Preconception Ethanol Exposure Studies and Epigenetic Mechanisms in the Male Germline

      1 , 1 , 2 , 3 , 4
      Alcoholism: Clinical and Experimental Research
      Wiley

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          Abstract

          While alcohol use disorder (AUD) is a highly heritable psychiatric disease, efforts to elucidate that heritability by examining genetic variation (e.g., single nucleotide polymorphisms) have been insufficient to fully account for familial AUD risk. Perhaps not coincidently, there has been a burgeoning interest in novel non-genomic mechanisms of inheritance (i.e., epigenetics) that are shaped in the male or female germ cells by significant lifetime experiences such as exposure to chronic stress, malnutrition, or drugs of abuse. While many epidemiological and preclinical studies have long pointed to a role for the parental preconception environment in offspring behavior, over the last decade many studies have implicated a causal relationship between the environmentally-sensitive sperm epigenome and intergenerational phenotypes. This critical review will detail the heritable effects of alcohol and the potential role for epigenetics.

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          Is Open Access

          MODOMICS: a database of RNA modification pathways. 2017 update

          Abstract MODOMICS is a database of RNA modifications that provides comprehensive information concerning the chemical structures of modified ribonucleosides, their biosynthetic pathways, the location of modified residues in RNA sequences, and RNA-modifying enzymes. In the current database version, we included the following new features and data: extended mass spectrometry and liquid chromatography data for modified nucleosides; links between human tRNA sequences and MINTbase - a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments; new, machine-friendly system of unified abbreviations for modified nucleoside names; sets of modified tRNA sequences for two bacterial species, updated collection of mammalian tRNA modifications, 19 newly identified modified ribonucleosides and 66 functionally characterized proteins involved in RNA modification. Data from MODOMICS have been linked to the RNAcentral database of RNA sequences. MODOMICS is available at http://modomics.genesilico.pl.
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            Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder.

            Increasing evidence indicates that metabolic disorders in offspring can result from the father's diet, but the mechanism remains unclear. In a paternal mouse model given a high-fat diet (HFD), we showed that a subset of sperm transfer RNA-derived small RNAs (tsRNAs), mainly from 5' transfer RNA halves and ranging in size from 30 to 34 nucleotides, exhibited changes in expression profiles and RNA modifications. Injection of sperm tsRNA fractions from HFD males into normal zygotes generated metabolic disorders in the F1 offspring and altered gene expression of metabolic pathways in early embryos and islets of F1 offspring, which was unrelated to DNA methylation at CpG-enriched regions. Hence, sperm tsRNAs represent a paternal epigenetic factor that may mediate intergenerational inheritance of diet-induced metabolic disorders.
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              The noncoding RNA revolution-trashing old rules to forge new ones.

              Noncoding RNAs (ncRNAs) accomplish a remarkable variety of biological functions. They regulate gene expression at the levels of transcription, RNA processing, and translation. They protect genomes from foreign nucleic acids. They can guide DNA synthesis or genome rearrangement. For ribozymes and riboswitches, the RNA structure itself provides the biological function, but most ncRNAs operate as RNA-protein complexes, including ribosomes, snRNPs, snoRNPs, telomerase, microRNAs, and long ncRNAs. Many, though not all, ncRNAs exploit the power of base pairing to selectively bind and act on other nucleic acids. Here, we describe the pathway of ncRNA research, where every established "rule" seems destined to be overturned. Copyright © 2014 Elsevier Inc. All rights reserved.
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                Author and article information

                Contributors
                (View ORCID Profile)
                Journal
                Alcoholism: Clinical and Experimental Research
                Alcohol Clin Exp Re
                Wiley
                0145-6008
                1530-0277
                April 26 2019
                April 26 2019
                Affiliations
                [1 ]Center for Neuroscience University of Pittsburgh School of Medicine Pittsburgh Pennsylvania
                [2 ]Department of Pharmacology & Chemical Biology University of Pittsburgh School of Medicine Pittsburgh Pennsylvania
                [3 ]Department of Anesthesiology and Perioperative Medicine University of Pittsburgh School Medicine Pittsburgh Pennsylvania
                [4 ]Department of Neurobiology University of Pittsburgh School of Medicine Pittsburgh Pennsylvania
                Article
                10.1111/acer.14029
                6551262
                30908630
                39438ebb-e877-4b91-9ef5-616e1ee893ee
                © 2019

                http://doi.wiley.com/10.1002/tdm_license_1.1

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