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      Lactobacillus spp. attenuate antibiotic-induced immune and microbiota dysregulation in honey bees

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          Abstract

          Widespread antibiotic usage in apiculture contributes substantially to the global dissemination of antimicrobial resistance and has the potential to negatively influence bacterial symbionts of honey bees ( Apis mellifera). Here, we show that routine antibiotic administration with oxytetracycline selectively increased tetB (efflux pump resistance gene) abundance in the gut microbiota of adult workers while concurrently depleting several key symbionts known to regulate immune function and nutrient metabolism such as Frischella perrera and Lactobacillus Firm-5 strains. These microbial changes were functionally characterized by decreased capped brood counts (marker of hive nutritional status and productivity) and reduced antimicrobial capacity of adult hemolymph (indicator of immune competence). Importantly, combination therapy with three immunostimulatory Lactobacillus strains could mitigate antibiotic-associated microbiota dysbiosis and immune deficits in adult workers, as well as maximize the intended benefit of oxytetracycline by suppressing larval pathogen loads to near-undetectable levels. We conclude that microbial-based therapeutics may offer a simple but effective solution to reduce honey bee disease burden, environmental xenobiotic exposure, and spread of antimicrobial resistance.

          Abstract

          Daisley et al. show that antibiotic treatment with oxytetracycline impairs the gut microbiota and immune system of honey bees, and reduces capped brood counts. They also show that supplementation with lactobacilli during antibiotic recovery can reverse the harmful effects of the antibiotic treatment. Their findings offer a simple microbial-based solution that aims to reduce honey bee disease burden, environmental pollution by xenobiotics, and spread of antimicrobial resistance.

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          DADA2: High resolution sample inference from Illumina amplicon data

          We present DADA2, a software package that models and corrects Illumina-sequenced amplicon errors. DADA2 infers sample sequences exactly, without coarse-graining into OTUs, and resolves differences of as little as one nucleotide. In several mock communities DADA2 identified more real variants and output fewer spurious sequences than other methods. We applied DADA2 to vaginal samples from a cohort of pregnant women, revealing a diversity of previously undetected Lactobacillus crispatus variants.
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            Analyzing real-time PCR data by the comparative CT method

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              The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments.

              Currently, a lack of consensus exists on how best to perform and interpret quantitative real-time PCR (qPCR) experiments. The problem is exacerbated by a lack of sufficient experimental detail in many publications, which impedes a reader's ability to evaluate critically the quality of the results presented or to repeat the experiments. The Minimum Information for Publication of Quantitative Real-Time PCR Experiments (MIQE) guidelines target the reliability of results to help ensure the integrity of the scientific literature, promote consistency between laboratories, and increase experimental transparency. MIQE is a set of guidelines that describe the minimum information necessary for evaluating qPCR experiments. Included is a checklist to accompany the initial submission of a manuscript to the publisher. By providing all relevant experimental conditions and assay characteristics, reviewers can assess the validity of the protocols used. Full disclosure of all reagents, sequences, and analysis methods is necessary to enable other investigators to reproduce results. MIQE details should be published either in abbreviated form or as an online supplement. Following these guidelines will encourage better experimental practice, allowing more reliable and unequivocal interpretation of qPCR results.
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                Author and article information

                Contributors
                gregor@uwo.ca
                Journal
                Commun Biol
                Commun Biol
                Communications Biology
                Nature Publishing Group UK (London )
                2399-3642
                25 September 2020
                25 September 2020
                2020
                : 3
                : 534
                Affiliations
                [1 ]GRID grid.415847.b, ISNI 0000 0001 0556 2414, Centre for Human Microbiome and Probiotic Research, , Lawson Health Research Institute, ; London, ON Canada
                [2 ]GRID grid.39381.30, ISNI 0000 0004 1936 8884, Department of Microbiology and Immunology, , The University of Western Ontario, ; London, ON Canada
                [3 ]GRID grid.39381.30, ISNI 0000 0004 1936 8884, Department of Biology, , The University of Western Ontario, ; London, ON Canada
                [4 ]GRID grid.39381.30, ISNI 0000 0004 1936 8884, Department of Surgery, , The University of Western Ontario, ; London, ON Canada
                Author information
                https://orcid.org/http://orcid.org/0000-0001-5999-5792
                https://orcid.org/http://orcid.org/0000-0001-6324-2777
                https://orcid.org/http://orcid.org/0000-0002-5905-6581
                https://orcid.org/http://orcid.org/0000-0002-3591-6436
                https://orcid.org/http://orcid.org/0000-0002-5340-7467
                https://orcid.org/http://orcid.org/0000-0001-9658-5696
                Article
                1259
                10.1038/s42003-020-01259-8
                7519052
                32978472
                3968d66c-cf08-46c3-95e2-db87e42bb991
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 24 March 2020
                : 24 August 2020
                Funding
                Funded by: FundRef https://doi.org/10.13039/501100000046, Gouvernement du Canada | National Research Council Canada (Conseil national de recherches Canada);
                Award ID: RGPIN-2014-05188
                Award ID: CGSD-519379-2018
                Award Recipient :
                Funded by: FundRef https://doi.org/10.13039/501100000094, Ontario Ministry of Agriculture, Food and Rural Affairs (Ministère de l'Agriculture, de l'Alimentation et des Affaires rurales);
                Award ID: ND2017-3164
                Award ID: ND2017-3164
                Award Recipient :
                Funded by: Ontario Ministry of Agriculture, Food and Rural Affairs (Ministère de l'Agriculture, de l'Alimentation et des Affaires rurales)
                Categories
                Article
                Custom metadata
                © The Author(s) 2020

                bacterial host response,antimicrobial responses,microbiome,bacterial pathogenesis,microbial ecology

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