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      Faecal bacterial communities from Mediterranean loggerhead sea turtles ( Caretta caretta )

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          Most cited references 42

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          QIIME allows analysis of high-throughput community sequencing data.

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            Search and clustering orders of magnitude faster than BLAST.

             Robert Edgar (2010)
            Biological sequence data is accumulating rapidly, motivating the development of improved high-throughput methods for sequence classification. UBLAST and USEARCH are new algorithms enabling sensitive local and global search of large sequence databases at exceptionally high speeds. They are often orders of magnitude faster than BLAST in practical applications, though sensitivity to distant protein relationships is lower. UCLUST is a new clustering method that exploits USEARCH to assign sequences to clusters. UCLUST offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets. Binaries are available at no charge for non-commercial use at http://www.drive5.com/usearch.
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              A global map of human impact on marine ecosystems.

              The management and conservation of the world's oceans require synthesis of spatial data on the distribution and intensity of human activities and the overlap of their impacts on marine ecosystems. We developed an ecosystem-specific, multiscale spatial model to synthesize 17 global data sets of anthropogenic drivers of ecological change for 20 marine ecosystems. Our analysis indicates that no area is unaffected by human influence and that a large fraction (41%) is strongly affected by multiple drivers. However, large areas of relatively little human impact remain, particularly near the poles. The analytical process and resulting maps provide flexible tools for regional and global efforts to allocate conservation resources; to implement ecosystem-based management; and to inform marine spatial planning, education, and basic research.
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                Author and article information

                Journal
                Environmental Microbiology Reports
                Environmental Microbiology Reports
                Wiley
                1758-2229
                1758-2229
                September 09 2018
                June 2019
                September 09 2018
                June 2019
                : 11
                : 3
                : 361-371
                Affiliations
                [1 ]Unit of Microbial Ecology of Health, Department of Pharmacy and Biotechnology, Alma Mater StudiorumUniversity of Bologna Bologna Italy
                [2 ]Fondazione Cetacea Onlus Riccione Italy
                Article
                10.1111/1758-2229.12683
                © 2019

                http://onlinelibrary.wiley.com/termsAndConditions#vor

                http://doi.wiley.com/10.1002/tdm_license_1.1

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