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      Mapping Interactions with the Chaperone Network Reveals Factors that Protect Against Tau Aggregation

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          Abstract

          A network of molecular chaperones is known to bind proteins (“clients”) and balance their folding, function and turnover. However, it is often not clear which chaperones are critical for selective recognition of individual clients. It is also not clear why these key chaperones might fail in protein aggregation diseases. In this study, we utilized human microtubule-associated protein tau (MAPT or tau) as a model client to survey interactions between ~30 purified chaperones and ~20 disease-associated tau variants (~600 combinations). From this large-scale analysis, we identified human DnaJA2 as an unexpected, but potent, inhibitor of tau aggregation. DnaJA2 levels were correlated with tau pathology in human brains, supporting the idea that it is an important regulator of tau homeostasis. Of significance, we found that some disease-associated tau variants were relatively immune to interactions with chaperones, suggesting a model in which avoiding physical recognition by chaperone networks may contribute to disease.

          Impact Statement

          Large-scale screening of chaperone interactions with tau and its variants identified DnaJA2 as a key protective factor in tauopathy.

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          Most cited references68

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          Regulation of aging and age-related disease by DAF-16 and heat-shock factor.

          A.-L. Hsu (2003)
          The Caenorhabditis elegans transcription factor HSF-1, which regulates the heat-shock response, also influences aging. Reducing hsf-1 activity accelerates tissue aging and shortens life-span, and we show that hsf-1 overexpression extends lifespan. We find that HSF-1, like the transcription factor DAF-16, is required for daf-2-insulin/IGF-1 receptor mutations to extend life-span. Our findings suggest this is because HSF-1 and DAF-16 together activate expression of specific genes, including genes encoding small heat-shock proteins, which in turn promote longevity. The small heat-shock proteins also delay the onset of polyglutamine-expansion protein aggregation, suggesting that these proteins couple the normal aging process to this type of age-related disease.
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            Hsp104, Hsp70, and Hsp40: a novel chaperone system that rescues previously aggregated proteins.

            Hsp104 is a stress tolerance factor that promotes the reactivation of heat-damaged proteins in yeast by an unknown mechanism. Herein, we demonstrate that Hsp104 functions in this process directly. Unlike other chaperones, Hsp104 does not prevent the aggregation of denatured proteins. However, in concert with Hsp40 and Hsp70, Hsp104 can reactivate proteins that have been denatured and allowed to aggregate, substrates refractory to the action of other chaperones. Hsp104 cooperates with the chaperones present in reticulocyte lysates but not with DnaK of E. coli. We conclude that Hsp104 has a protein remodeling activity that acts on trapped, aggregated proteins and requires specific interactions with conventional chaperones to promote refolding of the intermediates it produces.
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              Widespread Proteome Remodeling and Aggregation in Aging C. elegans.

              Aging has been associated with a progressive decline of proteostasis, but how this process affects proteome composition remains largely unexplored. Here, we profiled more than 5,000 proteins along the lifespan of the nematode C. elegans. We find that one-third of proteins change in abundance at least 2-fold during aging, resulting in a severe proteome imbalance. These changes are reduced in the long-lived daf-2 mutant but are enhanced in the short-lived daf-16 mutant. While ribosomal proteins decline and lose normal stoichiometry, proteasome complexes increase. Proteome imbalance is accompanied by widespread protein aggregation, with abundant proteins that exceed solubility contributing most to aggregate load. Notably, the properties by which proteins are selected for aggregation differ in the daf-2 mutant, and an increased formation of aggregates associated with small heat-shock proteins is observed. We suggest that sequestering proteins into chaperone-enriched aggregates is a protective strategy to slow proteostasis decline during nematode aging.
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                Author and article information

                Journal
                101186374
                31761
                Nat Struct Mol Biol
                Nat. Struct. Mol. Biol.
                Nature structural & molecular biology
                1545-9993
                1545-9985
                16 March 2018
                30 April 2018
                May 2018
                30 October 2018
                : 25
                : 5
                : 384-393
                Affiliations
                [1 ]Department of Neurology, University of California at San Francisco, San Francisco, CA, 94158, USA
                [2 ]Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, CA, 94158, USA
                [3 ]Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, TX, 77030, USA
                [4 ]llawarra Health and Medical Research Institute, School of Biological Sciences, University of Wollongong, Wollongong, New South Wales, Australia
                [5 ]Max-Planck-Institut für Biophysikalische Chemie, 37077 Goettingen, Germany
                [6 ]Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), von-Siebold-Str. 3a, 37075 Göttingen, Germany
                [7 ]Department of Neurology, University Medical Center Göttingen, University of Göttingen, Waldweg 33, 37073 Göttingen, Germany
                [8 ]Department of Molecular Medicine and Byrd Alzheimer’s Research Institute, University of South Florida, Tampa, Florida 33613, USA
                Author notes
                [* ]Correspondence can be addressed to: jason.gestwicki@ 123456ucsf.edu
                Article
                NIHMS951441
                10.1038/s41594-018-0057-1
                5942583
                29728653
                3acee935-cbcb-41c9-b0d3-a8325081c6d4

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                Categories
                Article

                Molecular biology
                biochemistry,neuroscience,proteostasis,protein folding,protein aggregation,protein-protein interactions,tauopathy,heat shock proteins,protein quality control,purified proteins

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