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      Effectiveness of the innovative 1,7-malaria reactive community-based testing and response (1, 7-mRCTR) approach on malaria burden reduction in Southeastern Tanzania

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          Abstract

          Background

          In 2015, a China-UK-Tanzania tripartite pilot project was implemented in southeastern Tanzania to explore a new model for reducing malaria burden and possibly scaling-out the approach into other malaria-endemic countries. The 1,7-malaria Reactive Community-based Testing and Response (1,7-mRCTR) which is a locally-tailored approach for reporting febrile malaria cases in endemic villages was developed to stop transmission and Plasmodium life-cycle. The (1,7-mRCTR) utilizes existing health facility data and locally trained community health workers to conduct community-level testing and treatment.

          Methods

          The pilot project was implemented from September 2015 to June 2018 in Rufiji District, southern Tanzania. The study took place in four wards, two with low incidence and two with a higher incidence. One ward of each type was selected for each of the control and intervention arms. The control wards implemented the existing Ministry of Health programmes. The 1,7-mRCTR activities implemented in the intervention arm included community testing and treatment of malaria infection. Malaria case-to-suspect ratios at health facilities (HF) were aggregated by villages, weekly to identify the village with the highest ratio. Community-based mobile test stations (cMTS) were used for conducting mass testing and treatment. Baseline (pre) and endline (post) household surveys were done in the control and intervention wards to assess the change in malaria prevalence measured by the interaction term of ‘time’ (post vs pre) and arm in a logistic model. A secondary analysis also studied the malaria incidence reported at the HFs during the intervention.

          Results

          Overall the 85 rounds of 1,7-mRCTR conducted in the intervention wards significantly reduced the odds of malaria infection by 66% (adjusted OR 0.34, 95% CI 0.26,0.44, p < 0001) beyond the effect of the standard programmes. Malaria prevalence in the intervention wards declined by 81% (from 26% (95% CI 23.7, 7.8), at baseline to 4.9% (95% CI 4.0, 5.9) at endline). In villages receiving the 1,7-mRCTR, the short-term case ratio decreased by over 15.7% (95% CI − 33, 6) compared to baseline.

          Conclusion

          The 1,7-mRCTR approach significantly reduced the malaria burden in the areas of high transmission in rural southern Tanzania. This locally tailored approach could accelerate malaria control and elimination efforts. The results provide the impetus for further evaluation of the effectiveness and scaling up of this approach in other high malaria burden countries in Africa, including Tanzania.

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          Impact of Artemisinin-Based Combination Therapy and Insecticide-Treated Nets on Malaria Burden in Zanzibar

          Introduction The increased malaria-related morbidity and mortality, especially in children under the age of 5 y (“under five”), due to emerging resistance of Plasmodium falciparum to conventional antimalarial drugs calls for immediate actions to “Roll Back Malaria” in sub-Saharan Africa. This need has been clearly recognized in the Millennium Development Goals “to halt and begin to reverse malaria incidence” [1] as well as in the Abuja Declaration objective to halve malaria mortality in Africa by 2010 through implementation of combined control strategies [2]. In the year 2000, the overall treatment failure of chloroquine was found to be 60% in a 14-d efficacy trial; consequently the Zanzibar Ministry of Health and Social Welfare decided in November 2001 to change both first- and second-line treatment guidelines for uncomplicated malaria from chloroquine and sulfadoxine-pyrimethamine to artemisinin-based combination therapies (ACT) [3]. The ACT policy was implemented in September 2003, when Zanzibar became one of the first regions in sub-Saharan Africa to recommend routine use of ACT. This action was followed by strengthened vector control, culminating in a nation-wide distribution campaign of long-lasting insecticidal nets (LLINs) from early 2006. Both ACT and vector control measures have independently proven to be efficacious malaria control strategies. Ecological studies have credited ACT with enhancing treatment efficacy, reducing malaria transmission, and possibly forestalling drug resistance in low-endemicity areas [4,5]. Moreover, specific African trials have indicated that the use of insecticide-treated nets (ITNs) or indoor residual spraying can reduce mortality of children under five in Africa [6–9]. This is, however, to our knowledge the first study to examine the public health impact of wide-scale deployment of ACTs alone and combined with ITNs through the general health structure/channels on malaria indices and general health parameters in an endemic area in sub-Saharan Africa. Methods Study Site The study was conducted in North A District, Zanzibar, situated just off the coast of mainland Tanzania. The district is rural and has a population of about 85,000. Subsistence farming and fishing are the main occupations. Plasmodium falciparum is the predominant malaria species and Anopheles gambiae complex is considered the main vector. Malaria transmission is stable with seasonal peaks related to rainfall in March–May and October–December. Malaria transmission in the district prior to the interventions has been reported to be high, but specific entomological data are not available to allow a precise characterization of malaria transmission intensity. However, during the screening process of a major antimalarial drug trial conducted in 2002–2003, a P. falciparum prevalence exceeding 30% was observed in febrile children under five [10], suggesting that North A District had been a high transmission area prior to ACT implementation in September 2003. North A District has one Primary Health Care Centre, which includes a hospital with inpatient and laboratory services, e.g., blood transfusion and malaria microscopy services. Basic medical treatment services without laboratory support are provided in 12 Primary Health Care Units located in different shehias (the smallest political administrative unit in Zanzibar). Drugs, including conventional and artemisinin monotherapies, are also available in private shops throughout the district. Malaria Control Interventions Figure 1 illustrates time of implementation of the two malaria control interventions. Figure 1 Malaria Interventions, Cross-Sectional Surveys, Monthly Rainfall, and Reported Clinical Malaria Diagnoses in Children under 5 Years of Age in North A District, Zanzibar (A) Start of the implementation of artemisinin-based combination therapy for treatment of uncomplicated malaria in September 2003. (B) Introduction of LLINs in February 2006. Promotion of ITNs started in January 2004; the use of conventional ITNs, however, remained low, until the introduction of LLINs. Outpatient data for 2006 are up to June. First intervention—ACT. A loose combination of artesunate and amodiaquine (AS+AQ; from various suppliers with preapproval from WHO) and a fixed combination of artemether–lumefantrine (Coartem; Novartis, Basel, Switzerland), were implemented as first- and second-line treatment, respectively, for uncomplicated malaria in all public health facilities from September 2003. In a pre-implementation assessment of the new treatment policy, partly conducted in North A District 2002–2003, both AS+AQ and artemether–lumefantrine were highly efficacious with PCR-adjusted cure rates by day 28 above 90% [10]. Quinine remained the drug of choice for severe malaria and sulfadoxine-pyrimethamine for intermittent preventive treatment during pregnancy. From September 2003, chloroquine was withdrawn from all health facilities and replaced by free provision of ACT to all malaria patients. Total treatment courses of AS+AQ dispensed in North A 2004 and 2005 were 34,724 and 12,819, respectively. The supply of ACT has been uninterrupted, with no reports of AS+AQ being out of stock from any public health facility in the district during 2003–2006 (unpublished data). ACTs were purchased with support from African Development Bank and Global Fund to Fight AIDS, Tuberculosis and Malaria (GFATM). Second intervention—vector control. A policy to distribute conventional ITNs to the most vulnerable groups—children under five and pregnant women—free of charge through antenatal clinics or local shehia leaders was officially launched in 2004. However, ITN coverage and use remained low in North A District 2004 and 2005 due to limited number of ITNs distributed, 4,026 and 1,550, respectively. A mass campaign was therefore initiated early 2006, with distribution of 23,000 LLINs to the two most vulnerable groups in North A. This campaign was supported by GFATM and the US Agency for International Development. Cross-Sectional Surveys Three cross-sectional surveys with the primary objective to determine P. falciparum prevalences were conducted in North A District between 2003 and 2006. A two-stage cluster sample technique was used. First shehias and then the households were randomly selected from the sampling frame obtained from the Office of Chief Government Statistician, Zanzibar. The sampling frame was updated before each survey. The first exploratory survey, conducted in May 2003, included 625 households and provided baseline data prior to ACT and widespread ITN implementation. Sample size calculations for the follow-up surveys conducted in May 2005 and 2006 were based on the proportion of children under five with malaria parasitemia in 2003, about 9%, and an assumed relative error of 20%. The calculated number of households to be included was 490 after adjusting for a design effect of 2. Trained interviewers visited all selected households. Interviews and blood sample collection were initiated upon written consent from head of each household and proxy consent from the mother or guardian of each child. Information was recorded using a structured questionnaire on recent febrile illness, mosquito net use, and care-seeking behavior from each individual present in the household at the time of the survey. We did not replace households in which residents were not present at time of survey, could not be located, or refused to participate. Thick blood films were collected from all consenting participants, stained with 5% Giemsa for 30 min, and examined by experienced microscopists for presence and density of P. falciparum parasites. If fewer than ten parasites were detected per 200 white blood cells, examinations were extended to 500 white blood cells. Blood slides were considered negative if no asexual parasites were found in 200 high-power fields. High-density parasitemia was defined as presence of ≥ 5,000 parasites/μl [11]. Quality control was conducted for all positive slides and 10% of the negative slides [12]. Health Facility Records Malaria-related indicators, i.e., outpatient attendances, hospital admissions and blood transfusions, from all 13 public health facilities in North A District were obtained from the Health Management and Information System (HMIS) records of the Zanzibar Ministry of Health and Social Welfare. The existing HMIS records were about 90% complete for the period 2000–2004. Data were validated and missing information retrieved by retrospective review of source documents from all 13 health facilities. This confirmed the HMIS records and resolved missing or inconsistent data, which increased the completeness to nearly 100%. A database of malaria-related indicators was created on the basis of this retrospective review. Data from 2005 were abstracted on quarterly basis. Vital Statistics Records of vital events, i.e., births and deaths, for the period 1998–2005 were obtained from the District Commissioner's Office (DCO) in North A. Annual crude mortalities of children under five were estimated from these data. Demographic estimates were obtained from Tanzania National Population and Housing Census 2002. Rainfall Complete records of monthly rainfall during 1999–2005 were obtained from official registers of the Tanzania Metrological Agency of the Ministry of Communications and Transport. On Unguja island, rainfall is centrally measured in one weather station, situated 26 km (radially) from North A District. The mean annual rainfalls recorded in 2003, 2004, 2005, and 2006 were 702, 1,934, 1,231, and 1,214 mm, respectively. The corresponding mean seasonal rainfall (March–May) between 2003 and 2006 was 285, 786, 890, and 613 mm, respectively. During the post-ACT intervention period (2004–2006) the mean annual and seasonal rainfall was 8%–12% lower than the pre-ACT intervention period (2000–2002). However, the only year with a marked reduction in the mean annual and seasonal rainfalls was the year 2003 with two- to three-fold lower rainfall, as compared to both the preceding and subsequent 3 y. Data Processing and Analysis Data were entered and validated using Microsoft Access and Excel. Statistical analyses for cross-sectional surveys, health facility records, vital statistics, and rainfall data were performed using Stata version 8. Analysis for the surveys was corrected for multi-stage sampling errors using the Rao-Scott second order correction [13]. A logistic regression model with robust standard errors (robust cluster) was used to adjust for the effect of age, sex, sleeping under a mosquito-net, and asset index on asexual P. falciparum prevalence and gametocyte carriage across the study years. Households were the primary sampling units in the surveys and were defined as clusters. Wald test was used to assess the fit of the model and interactions between covariates incorporated in the model. Odds ratios were adjusted for the complex sampling design and covariates listed above. Pearson correlation coefficients were calculated to assess the linear relationships between monthly rainfall and outpatient malaria diagnosis, and malaria-attributed deaths. Ethical Approval Protocols for the household surveys were reviewed and approved by the Medical Research Coordinating Committee of the Tanzanian Commission on Science and Technology, the Zanzibar Health Research Council and the institutional review board of US Centers for Disease Control and Prevention. Results Cross-Sectional Surveys The timings of the cross-sectional surveys in relation to start of each malaria control intervention and seasonal rainfalls are presented in Figure 1. The number of households enrolled and participant characteristics in the respective surveys are shown in Table 1. Over 95% of all participants agreed to both answer questionnaires and provide blood samples in the respective surveys. Table 1 Number of Households Surveyed and Characteristics of Survey Participants The parasite prevalences and odds ratios (ORs) of asexual P. falciparum parasitemia and gametocyte carriage at the time of cross-sectional surveys are shown in Table 2. Between 2003 and 2005 the parasite prevalence was reduced by about 50% in children under five. A further 10-fold decrease in P. falciparum prevalence was observed between 2005 and 2006, following mass distribution of LLINs specifically targeting this age group. Concomitant reductions of parasite prevalence were observed in children over the age of 5 y, although only by about 3-fold, between 2005 and 2006 (OR 0.41, 95% confidence interval [CI] 0.13–1.21), p = 0.08). Table 2 Parasite Prevalence and ORs of P. falciparum Asexual Parasitemia and Gametocytemia in Children 0–14 Years of Age in North A District, Zanzibar, in May 2003, 2005, and 2006 High-density parasitemia (≥5,000/μl) was found in 14 (2.7%) and 2 (0.6%) children under five in 2003 and 2005, respectively. No child carried high-density parasitemia in 2006. Reported fever within 14 d prior to the survey was similar in 2003 and 2006 among children under five (2003, 13% [95% CI 11–17]; 2006, 12% [95% CI 9–16]), whereas care-seeking at public health facilities by recently febrile children under five increased significantly (2003 was reference year; 2005, OR 3.91 [95% CI 0.85–17.9]; 2006, OR 5.5 [95% CI 2.3–13.3]; p-value for trend < 0.001). The proportions of children under five sleeping under effective ITNs were below 10% in both 2003 and 2005 (Table 1), whereas in 2006, 90% were reported sleeping under an LLIN on the night before survey. Health Facility Surveillance All reported clinical outpatient malaria diagnoses in North A District between January 1999 and June 2006 among children under five are shown by month in Figure 1 and by year in Table 3. Between 2002 and 2005 the total number of out-patient malaria diagnoses decreased by 77%. The annual incidences of malaria diagnoses standardized per 1,000 children under five in North A District were 843, 786, and 233 in 2003, 2004, and 2005, respectively. The total number of children under five attending public health facilities for any cause during 1999 and 2005 remained relatively constant, ranging from 31,069 to 39,374 annually. Up to 2003 malaria accounted for about 50% of all outpatient diagnoses in this age group, whereas in 2005 this proportion had decreased to 13%. Table 3 Outpatient Malaria Diagnoses, Hospital Admissions, Blood Transfusions, and Malaria-Attributed Deaths in North A District, Zanzibar, between 2000 and 2005 Malaria-related hospital admissions, non-malaria admissions, and blood transfusions in children under five between 2000 and 2005 are also shown in Table 3. From 2002 to 2005, malaria-related admissions, blood transfusions, and malaria-attributed mortality decreased by 77%, 67%, and 75%, respectively. Crude Mortality Data A total of 23,200 live births and 1,032 deaths in children under five (49% females) were registered between January 1998 and December 2005. The annual mortality figures for children under five, children (1–4 y), and infants (0–1 y) are shown in Table 4. Between 2002 and 2005, crude under five, infant, and child mortality decreased by 52%, 33%, and 71%, respectively. Table 4 Mortality of Children under 5 Years of Age in North A District, Zanzibar between 1998 and 2005 Relationships between Rainfall and Malaria Diagnosis and Deaths In the pre-ACT intervention period (2000–2002), significant positive correlations were found between monthly rainfall and both outpatient malaria diagnoses (Pearson correlation coefficient [r p] = 0.59, p < 0.001) and malaria-attributed deaths (r p = 0.75, p < 0.001), when data were adjusted to allow for a 1-mo lag between rainfall and malaria diagnoses and deaths. However, in the post-ACT intervention period (2003–2005), no significant correlations were found between monthly rainfall and outpatient malaria diagnosis (r p = −0.05; p = 0.75) or malaria-attributed deaths (rp = 0.23; p = 0.20). Discussion Malaria burden in Zanzibar, as in most parts of sub-Saharan Africa, has remained high and in many areas even increased during the last 10–20 y, a major reason being rapid spread of resistance to commonly used monotherapies against malaria. This problem has necessitated urgent implementation of new and effective control strategies to “Roll Back Malaria.” Two main cornerstones in this effort are the introduction of ACTs for treatment of uncomplicated malaria and the promotion of ITN use. The targets for the implementation of these new strategies have been defined by the UN Millennium Development Goals [1] and the Abuja Declaration [2], to be achieved by the years 2015 and 2010, respectively. Deployment of ACTs The ACTs were dispensed free of charge to all patients in the study area through public health facilities from September 2003 onwards. The ACT implementation and deployment was very rapid, effective, and with high coverage. Monitoring of drug supplies confirmed that ACTs were available throughout the study period in all 13 public health care settings in North A District. This outcome also indicates that estimates were adequate of the needed and thus deployed numbers of ACT treatments in the district. This result was accomplished despite an apparent two-fold increase in care seeking among children under the age of 5 y at public health facilities as observed in the cross-sectional surveys. We believe that the observed shift in treatment-seeking behavior at public facilities may be related to availability of free, effective ACTs. A previous study in Zanzibar showed that people's attitudes towards health seeking at public health facilities (biomedical practices) are negatively influenced by the distribution of ineffective antimalarial drugs [14]. High ACT coverage was rapidly achieved in malaria patients despite availability of other drugs in the private sector. This achievement was probably influenced both by comprehensive information to the public and health care staff and by the strong commitment of the Zanzibar government to rapidly ensure free coverage of the ACTs. Also, in North A District, as well as in Zanzibar generally, the entire population has relatively easy access to public health facilities, which are located within 5 km from any community and are served by good transport links. However, the absence of co-formulation or even of co-blistering of the two compounds in the first-line treatment, artesunate and amodiaquine, may have resulted in some degree of monotherapy with either compound. Mortality Impact Our study provides the first, to our knowledge, observation of a reduction in mortality of children under five following introduction of ACTs solely in a stable malaria-endemic setting. The highly significant reduction of 52% in crude under-five mortality according to vital statistics between 2002 and 2005 also highlights the importance of malaria as a major cause of death among children in malaria-endemic areas. The 71% reduction among children aged 1–4 y indicates that the relative contribution of malaria to crude mortality is particularly important in this age group. Major reductions in crude under-five mortality has also been observed in previous randomized intervention studies with ITNs [6,7] and community-based malaria treatment [15,16], but the reduction rates (between 25% and 40%) have been less pronounced than those in our study in Zanzibar. We believe our findings are valid and represent a true picture of the effects of ACT deployment in North A District, Zanzibar. No other major political, socioeconomic, or health-care change with the potential to halve mortality in children under five occurred in Zanzibar after 2002. This includes Expanded Programme on Immunization coverage, which remained constantly above 80% in the district during 1999–2005. Furthermore, there was no significant change in rainfall that may have contributed to the observed reduction in malaria transmission. Indeed, the only year with reduced rainfall with potential influence on vector capacity occurred before the introduction of ACTs—in 2003. Increased use of ITNs may also represent a potential confounding factor in our study. However, the ITN use was below 10% during 2004 and 2005 as reported and observed during the cross-sectional surveys. A significant improvement in ITN coverage was only achieved in 2006 after the introduction of LLINs (see further below) and only affected the 2006 cross-sectional results. We chose 2002 as reference year in our analyses of health facility surveillance and under-five mortality, because 2002 represents the last complete year before ACT introduction in September 2003. Routinely collected mortality statistics may underestimate the true values. However, such data have been shown to provide valid mortality trends [17,18]. Morbidity Impact A significant reduction was found with regard to hospitalization of malaria patients and incidence of blood transfusions, which may be considered proxy indicators of severe malaria. The reduction of severe malaria showing a similar pattern thus supports the under-five mortality trends. This health impact probably represents effects of improved case management of uncomplicated malaria with ACT, thus preventing the development of severe manifestations of the disease. The decrease in malaria morbidity (and mortality) at health facilities between 2003 and 2005 confirms the therapeutic efficacy of ACT [10], but the reduction in outpatient malaria diagnoses may also reflect some transmission blocking effect of artemisinin derivatives through its gametocytocidal activity. Reduction in transmission potential has been suggested after the introduction of artemisinin derivatives (before vector control) for routine treatment in a low and seasonal malaria transmission setting in Thailand [4]. Data obtained from routine health facility records have inherent potential pitfalls and need to be interpreted cautiously. However, the fact that they all show the same downward trend after improved coverage of malaria prevention and treatment interventions, and with no change in the climatic conditions that are favorable for malaria transmission, supports the plausible conclusion that enhanced malaria control interventions contributed to the observed public health benefits. Deployment of ITNs The deployment of LLINs in early 2006 provided a high coverage, i.e., over 90% reported use in children under five in the cross-sectional survey in May 2006. Importantly, this high mosquito-net use was observed after strong government commitment and after free LLIN distribution to children under five and pregnant women. The most significant decrease in prevalence of asymptomatic parasitemia was achieved in 2006, when LLINs were widely used by the children under five, whereas the major impact on the under-five mortality was achieved earlier with ACT use only. Strengthened vector control and the use of ACT also resulted in marked and sustained malaria control in South Africa [5]. The similar public health benefits observed in North A supports the concomitant use of vector control and ACT for malaria control. However, it should be emphasized that our study captures short-term trends in malaria control in North A, which may be too short to generalize long-term trends in the burden of malaria. Sustained coverage and use of LLINs by vulnerable groups is yet to be demonstrated, especially under declining malaria endemicity and if the free LLIN distribution scheme were to be changed. Conclusions The declining under-five mortality, malaria morbidity, and malaria prevalence observed in our study is the first comprehensive evidence supporting the major public health benefits of ACT and ITNs in a stable endemic malaria transmission setting in sub-Saharan Africa. The findings suggest that ACTs with high coverage of ITN use may potentially even eliminate malaria as a public health problem in highly endemic areas of sub-Saharan Africa. High community uptake of the two interventions is probably required but indeed achievable if, as in our study, they are easily available free of charge. The UN Millennium Development Goals to alleviate malaria as a major public health problem and substantially reduce the under-five mortality in sub-Saharan Africa are thus achievable even in settings with historically intense malaria transmission. The sustainability of these efforts as well as surveillance to prevent resurgence of malaria represent key research and programmatic follow-up issues of malaria control in Africa.
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            Stable and Unstable Malaria Hotspots in Longitudinal Cohort Studies in Kenya

            Introduction Many infectious disease show marked heterogeneity of transmission [1]. Mathematical models predict that this heterogeneity reduces the efficacy of disease control strategies [2], and intensifying control measures on foci of high transmission is predicted to be very effective in reducing overall transmission [1]. Marked spatial heterogeneity of malaria transmission on the household level is consistently detected when analysed [3]–[9], and results from both genetic and environmental factors [10],[11]. It is unclear how stable hotspots are in longitudinal data. Malaria risk is related to environmental factors [12] including altitude [13], cultivation practices [14], urbanization [15], and distance from bodies of water [16]. However, ecological analyses to guide malaria control have been limited by the following factors: the overall models are complex [17]–[19], the same ecological feature may not have a consistent effect in different settings [20],[21], and there is marked residual variation in malaria risk despite models with detailed ecological data [22]. Furthermore, the resolution of multitemporal remote sensing satellite data (i.e. data based on more than a single snap-shot) for environmental monitoring is rarely finer than 0.5–1 km [23]. Since vector dispersion occurs on average over 0.5–1 km distances [24]–[29], this is the scale at which “hotspots” of transmission need to be identified in order to impact overall transmission. Malaria episodes have been found to cluster at this scale to form hotspots in high resolution geo-spatial analyses in Mali [6], Uganda [7], Ethiopia [30], and the highlands of Kenya [31],[32]. Here, we have conducted an analysis of malaria episodes and parasitaemia over 12 y, a substantially longer time period than has been reported previously, across three different cohorts without conspicuous variations in geography, such as nearby water bodies. We examine febrile episodes, asymptomatic parasitaemia, serological markers of exposure, environmental remote sensing data, and molecular studies of parasite clones to describe the spatial and temporal limits of hotspots, and to examine whether heterogeneity can be predicted. Methods The approval for human participation in these cohorts was given by Kenya Medical Research Institute Scientific committee and National Review and Ethical Committee of Kenya Medical Research Institute, and was conducted according to the principles of the declaration of Helsinki. Surveillance for Malaria The cohorts under surveillance for malaria episodes were located in Chonyi, Ngerenya, and Junju sublocations of Kilifi District, on the coast of Kenya between January 1998 and June 2009 (Figure 1). Concurrent entomological studies and parasite prevalence rates suggest that the transmission intensity is higher in Junju and Chonyi than in Ngerenya [33],[34], but transmission has been falling throughout the period of study [35]. 10.1371/journal.pmed.1000304.g001 Figure 1 The distribution of homesteads monitored in the three cohorts is shown within Kilifi District. The field methods used to identify episodes of febrile malaria and asymptomatic parasitaemia have previously been described [36],[37]. Weekly active surveillance was undertaken, and children with fever had blood slides for malaria parasites. In Chonyi and Ngerenya, children with either subjective (i.e., reported) or objective fever (temperature ≥37.5°C) had blood smears performed for estimating the parasite density. In Junju blood smears were done only on children with an objective fever, but children with subjective fever were seen again 6–12 h later, and the temperature measurement repeated. Blood smears were made if objective fever was confirmed at this measurement. The parents of the children in Chonyi and Ngerenya were instructed to report to Kilifi District Hospital 20 km away if the child had any symptoms of disease at any time (and reimbursed for travel expenses), and in Junju trained field workers were available at all times in the villages for passive surveillance. Antimalarials were supplied for proven episodes of malaria by the study team in accordance with government of Kenya guidelines; this was sulfadoxine-pyrimethamine until 2004, and co-artemether thereafter. Study participants may have used private clinics or bought antimalarials without the study team's knowledge, but given the availability of free treatment this was probably infrequent. Surveys for asymptomatic parasitaemia were undertaken once yearly, immediately before the rainy season. All individuals recruited to the study were asked to attend for blood sampling, and microscopy results were available for 70%–88% of participants for each survey. The Geographic Positioning System coordinates from the Kilifi Demographic Surveillance Survey were linked to each homestead in the study. In Ngerenya and Chonyi, all the residents at individual homesteads were recruited, but in Junju only children under 8 y of age were recruited. The homesteads in Ngerenya and Junju were evenly spaced throughout the study location, but in Chonyi the homesteads were distributed along a central road through the study area. Children born in the study homesteads during the period of monitoring were recruited, and so the average age of the cohort did not increase over time (Table 1). 10.1371/journal.pmed.1000304.t001 Table 1 Cohort summary characteristics. Characteristics Chonyi Junju Ngerenya Asymptomatic parasitaemia prevalence rate 35% 32% 14% Incidence of febrile malaria (episodes per child year) 0.82 0.55 0.49 Average population 818 462 428 Median length of follow-up per child (y) 2.8 3.5 5.0 Median age of child (y) 5.5 4.2 5.7 Years of longitudinal monitoring in cohort 3 5 11 Homesteads 59 149 48 Participants per homestead 13.9 3.1 8.7 Average distance between adjacent sampled homesteads (km) 0.08 0.08 0.35 Age range (y) 0–80 0–12 0–90 Area including cohort dimensions N to S (km) 7 7.6 6 Area including cohort dimensions E to W (km) 9.4 7.6 8.4 The asymptomatic parasitaemia prevalence includes both adults and children. The incidence of febrile malaria is given for participants 2,500/µl [36]. Episodes of febrile malaria were censored for 21 d after the last episode. The incidence per homestead per year was calculated by episodes of febrile malaria per homestead divided by the number of children who were 0.05). The most significant parameters from each channel were then combined in a final multivariable logistic regression model, with further exclusion of nonsignificant parameters (p>0.05). There are approximately 120 MODIS picture elements (pixels) widths/heights to each degree of latitude/longitude at the equator (i.e., approximately 1 km squared per pixel), so several homesteads are included in each pixel. The logistic regression models were therefore adjusted to take account of the nonindependence of observations by using the sandwich estimator to group observations by pixel [50]. The coefficients and constant from the final model (i.e., with p 1.0 OD, but only 37% of the whole cohort's malaria episodes would occur in these homesteads. In order to include 50% of the malaria episodes, a cut-off of 0.85 would be required, and this would require 32% of the homesteads in the study area to be treated. Table 8 shows the results of monitoring episodes of febrile malaria during 1 or 2 mo of surveillance to predict febrile malaria episodes during the following year, on the basis of the assumption that any homestead with at least one episode of febrile malaria during the monitoring period would be targeted for treatment. 10.1371/journal.pmed.1000304.t008 Table 8 Predicted performance if all homesteads with one or more episode of febrile malaria during 1-mo monitoring are targeted for measures to interrupt transmission over the following year. Monitoring Percent Homesteads Targeted Percent Malaria Covered January (short rains) 28 73 March (dry) 17 48 May (start long rains) 26 68 September (dry) 20 65 November (dry) 17 56 Discussion We identified stable hotspots of asymptomatic parasitaemia, and unstable hotspots of febrile disease in each of three cohorts in Kilifi District. The hotspots of asymptomatic parasitaemia were characterized by nonsignificantly higher mean antibody titres, a lower mean age at febrile episodes, and lower overall incidences of febrile disease. There may have been an increase in the incidence of febrile malaria in the penumbra around the perimeter of the hotspots of asymptomatic parasitaemia (Figure 5). Furthermore, hotspots of asymptomatic parasitaemia were stable over the full 7 y of monitoring, whereas hotspots of febrile malaria were not stable past 3 y of monitoring. Taken together, these observations suggest the following explanation: that a rapid acquisition of immunity in stable high transmission hotspots offsets the high rates of febrile malaria that would otherwise result. Instead, a high prevalence of asymptomatic parasitaemia is seen [51]. Unstable hotspots are not associated with prior exposure, and hence relatively low levels of immunity, and therefore produce higher incidences of febrile disease. Although the unstable hotspots are directly associated with more febrile disease, hotspots of asymptomatic parasitaemia may be critical in maintaining transmission [52]. The satellite remote sensing data suggest a primarily environmental cause for stable hotspots, but it was unclear why some hotspots are unstable. It was not simply a seasonal effect, since there was no indication of a seasonal specificity of hotspots in pooled analysis by season. Potential explanations might be a changing prevailing wind direction [53] or the temporary presence of “superspreaders” as seen in other infectious diseases [54]. Insecticide-treated net (ITN) use has expanded in Kilifi generally [35] and in the Junju cohort specifically [55], but there was no evidence that there were hotspots of ITN use in our dataset (p = 0.9). The study is based on active case detection in a sample of the total population (5%–10%). Data from the missing homesteads might alter the dimensions and frequency of the hotspots identified, and clarify whether clustering is stronger at the level of individual homestead or at the level of groups of homesteads that form “hotspots.” The resolution of remote sensing data results in an average of six homesteads per pixel. The remote sensing data predicted hotspots, but heterogeneity in risk by individual homestead was also observed, and higher resolution remote sensing data are needed to further investigate this. The instability of hotspots of febrile malaria was not simply due to variations in age of the children monitored (Table 3). Furthermore, stable hotspots of asymptomatic parasitaemia were observed in Junju, where only children and not adults were recruited to the cohort. Although the three cohorts monitored were from geographically different areas, the study is limited by presenting data from a single district, and so cannot represent the great diversity of ecology that will be seen across sub-Saharan Africa. Other cohorts undergoing longitudinal surveillance should be examined to confirm our findings. Malaria transmission varies by geographical features such as altitude [13], cultivation practices [14], streams and dams [16], house construction [56], socioeconomic factors [57], and ITN use [58]. Data on these factors were not available for the analysis presented here, although there were no large water bodies in the study area. However, a previous analysis in one of the study areas demonstrated that both environmental factors at the homestead level and host genetic factors contributed substantially to variation in malaria risk [10]. Our analysis suggests that environmental factors identified by remote sensing are associated with stable hotspots of asymptomatic parasitaemia. The environment in Kenya is seasonal, with two rainy seasons per year. The strongest individual factors from remote sensing were not the means of any index, but rather the minimum, and phases for a vegetation index and indicators of temperature, consistent with previous studies that have demonstrated the importance of temporal monitoring [12]. The remote sensing data show strong cross-correlation, and significant individual factors are likely to be proxies for more complex environmental determinants of transmission. 48 different measures of remote sensing were tested, but after a Bonferroni correction p = 1.4×10−5 and p = 2×10−4 for the two most significant individual factors. The evidence for environmental causation of the unstable hotspots of febrile malaria was less strong. Nevertheless, p = 0.006 after a Bonferroni correction for the single individual factor retained in the final model. On principle component analysis the second and third components were significantly associated with hotspots of asymptomatic parasitaemia, but the first component was associated with hotspots of febrile malaria. This finding is consistent with a complex environmental causation of hotspots rather than a single factor, and different environmental causes for the two types of hotspot. Anti-AMA antibody titres were associated with hotspots, but seroprevalence and seroconversion rates did not predict hotspots. This association contrasts with previous findings on a larger geographical scale [59]. The effects of individual variation may become more noticeable on a smaller scale [60], and smaller scale hotspots are unlikely to be as stable as environmental features such as altitude that operate on a larger scale [61]. There was substantial heterogeneity of transmission inside and outside hotspots. This heterogeneity was not simply random variation, since the previous year's incidence per homestead was strongly predictive of subsequent risk (r = 0.57). Variation in malaria risk at the homestead level has been shown to be due to a mixture of genetic and environmental factors [10],[11]. Irrespective of the cause, hotspots have a substantial effect on overall transmission in the community [2]. Here, we demonstrate two levels of clustering; clustering at the homestead level, and hotspots of groups of high risk homesteads in 1.3-km radius areas. The “gradient” effect away from the perimeter of a hotspot is consistent with transmission in the majority of the cohort being maintained by transmission from within the hotspot of homesteads. Hence, targeting the 73% of febrile malaria within the 28% highest risk homesteads is likely to benefit the wider community, since the highest risk homesteads will increase transmission in the surrounding area [1]. The genotyping data suggest that individual parasite clones are associated with a hotspot of asymptomatic parasitaemia. This finding may be because particular hosts more frequently transmit their parasites within a hotspot [54], or because particular parasite clones have adapted to a geographical micro-environment, determined, for instance, by the vector species [62]. Genotypes were not available from febrile disease episodes. Clustering of episodes by individual is reported in many infectious diseases [1], and has been relevant to the control of diverse pathogens such as Escherichia coli [54], tuberculosis [63], gonorrhea [64], SARS [65], and leishmaniasis [66]. Clustering of malaria episodes by homestead [10] and larger geographical hotspots including groups of homesteads is well described [3]–[9],[67], but there are few data on the temporal stability of hotspots. Targeted strategies for malaria control need to consider two kinds of hotspot; stable hotspots of asymptomatic parasitaemia and unstable hotspots of febrile disease. One might argue against intervening in hotspots of asymptomatic parasitaemia, since rates of febrile disease are not high, and intervention might reduce host immunity. However, where transmission has fallen in areas of high transmission, substantial direct and indirect mortality and public health gains have been described in the short and long term [35],[68],[69]. Furthermore, these stable hotspots probably feed transmission in their penumbrae for a distance of several kilometres because of vector dispersion [24]–[29]. Hotspots of asymptomatic parasitaemia can be identified by parasite surveys, serological surveys, or, more conveniently, remote sensing. Hotspots of febrile disease may be targeted by monitoring presentations to the local dispensary during the dry season, and targeting the effected homesteads during the subsequent rains. The optimal protocol would be to monitor during the dry season in September and then treat for the following year, which would result in targeting 20% of the homesteads, accounting for 65% of the febrile malaria episodes during the following year. It is optimal to cover 100% of the homesteads with any control intervention (particularly ITN distribution). However, some other interventions are currently not practical on community-wide scale, such as repeated mass drug administration [70],[71], environmental modification [72]–[74], mass vaccination [75], or (in some circumstances) indoor residual spraying (IRS) [76]–[78], but become feasible if targeted on the 20% of homesteads at greatest risk. When transmission has reduced to very low levels, transmission remains geographically clustered [9],[79], and intensified control in these hotspots is key to achieving elimination. In our setting, as in much of sub-Saharan Africa, there is not an immediate prospect of elimination. Additional targeted control measures may be viewed simply as a cost-effective way of ensuring that those most in need get the intervention, but the stronger justification is that reducing transmission in hotspots will reduce transmission on the wider community [1]. Environmental interactions are complex in determining malaria risk per se [12], and so these findings should be validated in other datasets before firm recommendations for malaria control programmes are made. Supporting Information Figure S1 Receiver operator characteristics (ROCs) are shown for AMA-1 antibodies, MSP-2 antibodies, and for the model on the basis of selected remote sensing variables and principle component analysis of the remote sensing variables. The areas under the ROC curves were 0.61, 0.67, 0.68, and 0.68 for prediction of febrile malaria hotspots by AMA-1 and MSP-2 antibodies, and for the model and principal component analyses, respectively. For asymptomatic parasitaemia hotspots the areas under the curves were 0.70, 0.72, 0.82, and 0.73, respectively. (0.61 MB TIF) Click here for additional data file. Figure S2 The incidence of febrile malaria episodes cpy is shown for the three cohorts. More intense green colouring indicates higher incidence. (0.48 MB TIF) Click here for additional data file. Figure S3 The prevalence of asymptomatic malaria is shown for the three cohorts. More intense green colouring indicates higher incidence. (0.47 MB TIF) Click here for additional data file.
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              Communicating and Monitoring Surveillance and Response Activities for Malaria Elimination: China's “1-3-7” Strategy

              Qi Gao and colleagues describe China's 1-3-7 strategy for eliminating malaria: reporting of malaria cases within one day, their confirmation and investigation within three days, and the appropriate public health response to prevent further transmission within seven days.
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                Author and article information

                Contributors
                pchaki@ihi.or.tz
                zhouxn1@chinacdc.cn
                Journal
                Malar J
                Malar. J
                Malaria Journal
                BioMed Central (London )
                1475-2875
                14 August 2020
                14 August 2020
                2020
                : 19
                : 292
                Affiliations
                [1 ]GRID grid.198530.6, ISNI 0000 0000 8803 2373, National Institute of Parasitic Diseases, , Chinese Center for Disease Control and Prevention, ; 207 Rui Jin Er Road, Shanghai, 200025 People’s Republic of China
                [2 ]GRID grid.414543.3, ISNI 0000 0000 9144 642X, Ifakara Health Institute, ; P. O. Box 78378, Kiko Avenue, Mikocheni, Dar es Salaam, Tanzania
                [3 ]GRID grid.416786.a, ISNI 0000 0004 0587 0574, Swiss Tropical and Public Health Institute, ; Basel, Switzerland
                [4 ]GRID grid.6612.3, ISNI 0000 0004 1937 0642, University of Basel, ; Basel, Switzerland
                [5 ]GRID grid.198530.6, ISNI 0000 0000 8803 2373, Guangxi Center for Disease Control and Prevention, ; Nanning, China
                [6 ]GRID grid.449595.0, ISNI 0000 0004 0578 4721, Higher Institute of Health Sciences, , Université des Montagnes, ; Bangangté, BP 208 Cameroon
                [7 ]GRID grid.490706.c, National Malaria Control, Ministry of Health, Community Development, Gender, Elderly and Children, ; Dodoma, Tanzania
                [8 ]GRID grid.416716.3, ISNI 0000 0004 0367 5636, National Institute for Medical Research (NIMR), ; P.O. Box 9653, Dar es Salaam, Tanzania
                [9 ]GRID grid.3575.4, ISNI 0000000121633745, The Global Malaria Programme (GMP), World Health Organization, ; Geneva, Switzerland
                [10 ]GRID grid.38142.3c, ISNI 000000041936754X, Department of Global Health and Population, , Harvard T.H. Chan School of Public Health, ; Boston, MA USA
                Author information
                https://orcid.org/0000-0001-8879-7066
                http://orcid.org/0000-0003-1417-8427
                Article
                3363
                10.1186/s12936-020-03363-w
                7429894
                32799857
                3bb77eaa-020c-4d42-8595-1096f8c06951
                © The Author(s) 2020

                Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver ( http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

                History
                : 23 May 2020
                : 5 August 2020
                Funding
                Funded by: FundRef http://dx.doi.org/10.13039/501100000278, Department for International Development;
                Award ID: GHSP-CS-OP4-D02
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                © The Author(s) 2020

                Infectious disease & Microbiology
                malaria,1,7-mrctr approach,community-based,testing,treatment,response,health facilities,control,intervention,surveillance

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