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      Closing the gap between phenotyping and genotyping: review of advanced, image-based phenotyping technologies in forestry

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          Abstract

          Key message

          The lack of efficient phenotyping capacities has been recognized as a bottleneck in forestry phenotyping and breeding. Modern phenotyping technologies use systems equipped with various imaging sensors to automatically collect high volume phenotypic data that can be used to assess trees' various attributes.

          Context

          Efficient phenotyping has the potential to spark a new Green Revolution, and it would provide an opportunity to acquire growth parameters and dissect the genetic bases of quantitative traits. Phenotyping platforms aim to link information from several sources to derive knowledge about trees' attributes.

          Aims

          Various tree phenotyping techniques were reviewed and analyzed along with their different applications.

          Methods

          This article presents the definition and characteristics of forest tree phenotyping and reviews newly developed imaging-based practices in forest tree phenotyping.

          Results

          This review addressed a wide range of forest trees phenotyping applications, including a survey of actual inter- and intra-specific variability, evaluating genotypes and species response to biotic and abiotic stresses, and phenological measurements.

          Conclusion

          With the support of advanced phenotyping platforms, the efficiency of traits phenotyping in forest tree breeding programs is accelerated.

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          Most cited references133

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          Marker-assisted selection: an approach for precision plant breeding in the twenty-first century.

          DNA markers have enormous potential to improve the efficiency and precision of conventional plant breeding via marker-assisted selection (MAS). The large number of quantitative trait loci (QTLs) mapping studies for diverse crops species have provided an abundance of DNA marker-trait associations. In this review, we present an overview of the advantages of MAS and its most widely used applications in plant breeding, providing examples from cereal crops. We also consider reasons why MAS has had only a small impact on plant breeding so far and suggest ways in which the potential of MAS can be realized. Finally, we discuss reasons why the greater adoption of MAS in the future is inevitable, although the extent of its use will depend on available resources, especially for orphan crops, and may be delayed in less-developed countries. Achieving a substantial impact on crop improvement by MAS represents the great challenge for agricultural scientists in the next few decades.
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            Climate change, phenology, and phenological control of vegetation feedbacks to the climate system

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              Is Open Access

              Crop Phenomics and High-Throughput Phenotyping: Past Decades, Current Challenges, and Future Perspectives

              Since whole-genome sequencing of many crops has been achieved, crop functional genomics studies have stepped into the big-data and high-throughput era. However, acquisition of large-scale phenotypic data has become one of the major bottlenecks hindering crop breeding and functional genomics studies. Nevertheless, recent technological advances provide us potential solutions to relieve this bottleneck and to explore advanced methods for large-scale phenotyping data acquisition and processing in the coming years. In this article, we review the major progress on high-throughput phenotyping in controlled environments and field conditions as well as its use for post-harvest yield and quality assessment in the past decades. We then discuss the latest multi-omics research combining high-throughput phenotyping with genetic studies. Finally, we propose some conceptual challenges and provide our perspectives on how to bridge the phenotype-genotype gap. It is no doubt that accurate high-throughput phenotyping will accelerate plant genetic improvements and promote the next green revolution in crop breeding.
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                Author and article information

                Journal
                Annals of Forest Science
                Annals of Forest Science
                Springer Science and Business Media LLC
                1286-4560
                1297-966X
                December 2022
                May 09 2022
                December 2022
                : 79
                : 1
                Article
                10.1186/s13595-022-01143-x
                3c88be30-9c60-4270-97a8-9d8a218bbb8c
                © 2022

                https://creativecommons.org/licenses/by/4.0

                https://creativecommons.org/licenses/by/4.0

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