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      PDB Goodies--a web-based GUI to manipulate the Protein Data Bank file.

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          Abstract

          PDB Goodies is a web-based graphical user interface (GUI) to manipulate the Protein Data Bank file containing the three-dimensional atomic coordinates of protein structures. The program also allows users to save the manipulated three-dimensional atomic coordinate file on their local client system. These fragments are used in various stages of structure elucidation and analysis. This software is incorporated with all the three-dimensional protein structures available in the Protein Data Bank, which presently holds approximately 18 000 structures. In addition, this program works on a three-dimensional atomic coordinate file (Protein Data Bank format) uploaded from the client machine. The program is written using CGI/PERL scripts and is platform independent. The program PDB Goodies can be accessed over the World Wide Web at http://144.16.71.11/pdbgoodies/.

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          Author and article information

          Journal
          Acta Crystallogr. D Biol. Crystallogr.
          Acta crystallographica. Section D, Biological crystallography
          0907-4449
          0907-4449
          Aug 2002
          : 58
          : Pt 8
          Affiliations
          [1 ] Bioinformatics Centre, Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560 012, India.
          Article
          S090744490200985X
          12136164
          3ca4f428-1289-4d9c-a164-fe21cfbc1862

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