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      adegenet 1.3-1: new tools for the analysis of genome-wide SNP data.

      Bioinformatics (Oxford, England)
      Oxford University Press (OUP)

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          Abstract

          While the R software is becoming a standard for the analysis of genetic data, classical population genetics tools are being challenged by the increasing availability of genomic sequences. Dedicated tools are needed for harnessing the large amount of information generated by next-generation sequencing technologies. We introduce new tools implemented in the adegenet 1.3-1 package for handling and analyzing genome-wide single nucleotide polymorphism (SNP) data. Using a bit-level coding scheme for SNP data and parallelized computation, adegenet enables the analysis of large genome-wide SNPs datasets using standard personal computers.

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          Author and article information

          Journal
          21926124
          3198581
          10.1093/bioinformatics/btr521

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