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      New Xyleborine (Coleoptera: Curculionidae: Scolytinae) Genus With an Afrotropical-Neotropical Distribution

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          Abstract

          Plant-associated arthropods have been shown to cross large oceanic distances on floating plant material and to establish themselves on distant landmasses. Xyleborini (Coleoptera: Curculionidae: Scolytinae) ambrosia beetles occur in forests worldwide and are likely capable of long range dispersal. In less than 20 million years, this group dispersed from Asia to tropical regions of Africa and South America. The phylogeny, taxonomy, and biogeography of one Xyleborus species group which occurs on both continents are reviewed for this study. Based on a well-resolved molecular phylogeny resulting from parsimony, likelihood, and Bayesian analyses of four gene loci, we describe a new monophyletic genus, Xenoxylebora Osborn, Smith & Cognato, gen. nov., for this bicontinental Xyleborus species group with seven Afrotropical and six Neotropical species. Six new species are described: Xenoxylebora pilosa Osborn, Smith & Cognato, sp. nov. from Africa, and Xenoxylebora addenda Osborn, Smith & Cognato, sp. nov., Xenoxylebora calculosa Osborn, Smith & Cognato, sp. nov., Xenoxylebora hystricosa Osborn, Smith & Cognato, sp. nov., Xenoxylebora serrata Osborn, Smith & Cognato, sp. nov., and Xenoxylebora sulcata Osborn, Smith & Cognato, sp. nov., from South America. Seven new combinations from Xyleborus are proposed: Xenoxylebora caudata (Schedl 1957) comb. nov., Xenoxylebora collarti (Eggers 1932) comb. nov., Xenoxylebora perdiligens (Schedl 1937) comb. nov., Xenoxylebora sphenos (Sampson 1912) comb. nov., Xenoxylebora subcrenulata (Eggers 1932) comb. nov., and Xenoxylebora syzygii (Nunberg 1959) comb. nov. from Africa, and Xenoxylebora neosphenos (Schedl 1976) comb. nov. from South America. One new synonym is proposed: Xenoxylebora sphenos (Sampson 1912) = Xyleborus tenellusSchedl 1957 syn. nov. Descriptions, diagnoses, images, and a key to the identification of all 13 species are provided. The sequence of colonization between Africa and South America is uncertain for Xenoxylebora. Prevailing ocean currents and predominant locality patterns observed for other organisms suggest an African Xenoxylebora origin. However, the phylogeny, biogeographical analyses, and a calibrated divergence time suggest a possible South American origin for African Xenoxylebora (2.3 Ma, 95% HDP 4.5–0.6 Ma), which is supported by the occurrence of ocean counter currents between the continents and evidence of dispersal from South America to Africa among some plant and arthropod taxa.

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          IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

          Large phylogenomics data sets require fast tree inference methods, especially for maximum-likelihood (ML) phylogenies. Fast programs exist, but due to inherent heuristics to find optimal trees, it is not clear whether the best tree is found. Thus, there is need for additional approaches that employ different search strategies to find ML trees and that are at the same time as fast as currently available ML programs. We show that a combination of hill-climbing approaches and a stochastic perturbation method can be time-efficiently implemented. If we allow the same CPU time as RAxML and PhyML, then our software IQ-TREE found higher likelihoods between 62.2% and 87.1% of the studied alignments, thus efficiently exploring the tree-space. If we use the IQ-TREE stopping rule, RAxML and PhyML are faster in 75.7% and 47.1% of the DNA alignments and 42.2% and 100% of the protein alignments, respectively. However, the range of obtaining higher likelihoods with IQ-TREE improves to 73.3-97.1%.
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            ModelFinder: Fast Model Selection for Accurate Phylogenetic Estimates

            Model-based molecular phylogenetics plays an important role in comparisons of genomic data, and model selection is a key step in all such analyses. We present ModelFinder, a fast model-selection method that greatly improves the accuracy of phylogenetic estimates. The improvement is achieved by incorporating a model of rate-heterogeneity across sites not previously considered in this context, and by allowing concurrent searches of model-space and tree-space.
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              Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

              Abstract Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary history from molecular sequence data. Visualizing and analyzing the MCMC-generated samples from the posterior distribution is a key step in any non-trivial Bayesian inference. We present the software package Tracer (version 1.7) for visualizing and analyzing the MCMC trace files generated through Bayesian phylogenetic inference. Tracer provides kernel density estimation, multivariate visualization, demographic trajectory reconstruction, conditional posterior distribution summary, and more. Tracer is open-source and available at http://beast.community/tracer.
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                Author and article information

                Contributors
                (View ORCID Profile)
                (View ORCID Profile)
                Journal
                Insect Systematics and Diversity
                Oxford University Press (OUP)
                2399-3421
                July 01 2022
                July 01 2022
                July 01 2022
                July 01 2022
                July 27 2022
                : 6
                : 4
                Article
                10.1093/isd/ixac016
                3fe0f1d1-9db7-42b7-ba01-76a5c27fae10
                © 2022

                https://academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model

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