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      Is Open Access

      Optical imaging of single-protein size, charge, mobility, and binding

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          Abstract

          Detection and identification of proteins are typically achieved by analyzing protein size, charge, mobility and binding to antibodies, which are critical for biomedical research and disease diagnosis and treatment. Despite the importance, measuring these quantities with one technology and at the single-molecule level has not been possible. Here we tether a protein to a surface with a flexible polymer, drive it into oscillation with an electric field, and image the oscillation with a near field optical imaging method, from which we determine the size, charge, and mobility of the protein. We also measure antibody binding and conformation changes in the protein. The work demonstrates a capability for comprehensive protein analysis and precision protein biomarker detection at the single molecule level.

          Abstract

          Protein identification at the single-molecule level is the ultimate goal for biological research and disease diagnosis. Here, the authors identify the size, charge, mobility, and binding of individual protein molecules by measuring the optical and electrical responses of each protein molecule tethered to a surface.

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          Most cited references43

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          Microtubule dynamics: an interplay of biochemistry and mechanics

          Microtubules are dynamic polymers of αβ-tubulin that are essential for intracellular organization and chromosome segregation. Microtubule growth and shrinkage occur via addition and loss of αβ-tubulin subunits — biochemical processes. Dynamic microtubules can also exert forces by pushing or pulling against a load – mechanical processes. Recent advances at the intersection of biochemistry and mechanics have revealed the existence of multiple conformations of αβ-tubulin and their central role in dictating the mechanisms of microtubule dynamics and how microtubules do work. Microtubule associated proteins selectively target specific tubulin conformations to regulate microtubule dynamics, and mechanical forces can also influence microtubule dynamics by altering the balance of tubulin conformations. Importantly, the conformational states of tubulin dimers appear to be coupled throughout the lattice, in that the conformation of one dimer affects the conformation of its nearest neighbors and beyond. This coupling provides a long-range mechanism by which MAPs and forces can modulate microtubule growth and shrinkage. These findings provide evidence that the interplay between biochemistry and mechanics is essential for the cellular functions of microtubules.
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            Precision diagnostics: moving towards protein biomarker signatures of clinical utility in cancer

            This Opinion article focuses on the trends and progress being made in identifying protein biomarker signatures of clinical utility in cancer using, in particular, blood-based proteomics.
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              Single-cell western blotting

              To measure cell-to-cell variation in protein-mediated functions — a hallmark of biological processes — we developed an approach to conduct ~103 concurrent single-cell western blots (scWesterns) in ~4 hours. A microscope slide supporting a 30 µm-thick photoactive polyacrylamide gel enables western blotting comprised of: settling of single cells into microwells, lysis in situ, gel electrophoresis, photoinitiated blotting to immobilize proteins, and antibody probing. We apply this scWestern to monitor single rat neural stem cell differentiation and responses to mitogen stimulation. The scWestern quantifies target proteins even with off-target antibody binding, multiplexes to 11 protein targets per single cell with detection thresholds of <30,000 molecules, and supports analyses of low starting cell numbers (~200) when integrated with fluorescence activated cell sorting. The scWestern thus overcomes limitations in single-cell protein analysis (i.e., antibody fidelity, sensitivity, and starting cell number) and constitutes a versatile tool for the study of complex cell populations at single-cell resolution.
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                Author and article information

                Contributors
                shaopeng.wang@asu.edu
                Journal
                Nat Commun
                Nat Commun
                Nature Communications
                Nature Publishing Group UK (London )
                2041-1723
                21 September 2020
                21 September 2020
                2020
                : 11
                : 4768
                Affiliations
                [1 ]GRID grid.215654.1, ISNI 0000 0001 2151 2636, Biodesign Center for Biosensors and Bioelectronics, , Arizona State University, ; Tempe, AZ 85287 USA
                [2 ]GRID grid.215654.1, ISNI 0000 0001 2151 2636, School of Electrical, Computer and Energy Engineering, , Arizona State University, ; Tempe, AZ 85287 USA
                Author information
                http://orcid.org/0000-0002-1197-659X
                http://orcid.org/0000-0002-3595-0490
                http://orcid.org/0000-0002-2680-0503
                http://orcid.org/0000-0002-5206-153X
                Article
                18547
                10.1038/s41467-020-18547-w
                7505846
                32958747
                40196fb8-fb14-412e-9d70-8c0b44d9fe8c
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 25 June 2020
                : 31 August 2020
                Funding
                Funded by: FundRef https://doi.org/10.13039/100000936, Gordon and Betty Moore Foundation (Gordon E. and Betty I. Moore Foundation);
                Funded by: FundRef https://doi.org/10.13039/100000009, Foundation for the National Institutes of Health (Foundation for the National Institutes of Health, Inc.);
                Award ID: R44GM126720
                Award Recipient :
                Categories
                Article
                Custom metadata
                © The Author(s) 2020

                Uncategorized
                imaging studies,sensors,biosensors
                Uncategorized
                imaging studies, sensors, biosensors

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