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      The Emerging Roles of RNA Modifications in Glioblastoma

      review-article
      1 , 2 , 3 , 4 , * , 1 , 2 , 3 , 4 , *
      Cancers
      MDPI
      m6A, RNA modification, glioblastoma, epi-transcriptome, RNA processing

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          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Glioblastoma (GBM) is a grade IV glioma that is the most malignant brain tumor type. Currently, there are no effective and sufficient therapeutic strategies for its treatment because its pathological mechanism is not fully characterized. With the fast development of the Next Generation Sequencing (NGS) technology, more than 170 kinds of covalent ribonucleic acid (RNA) modifications are found to be extensively present in almost all living organisms and all kinds of RNAs, including ribosomal RNAs (rRNAs), transfer RNAs (tRNAs) and messenger RNAs (mRNAs). RNA modifications are also emerging as important modulators in the regulation of biological processes and pathological progression, and study of the epi-transcriptome has been a new area for researchers to explore their connections with the initiation and progression of cancers. Recently, RNA modifications, especially m 6A, and their RNA-modifying proteins (RMPs) such as methyltransferase like 3 (METTL3) and α-ketoglutarate-dependent dioxygenase alkB homolog 5 (ALKBH5), have also emerged as important epigenetic mechanisms for the aggressiveness and malignancy of GBM, especially the pluripotency of glioma stem-like cells (GSCs). Although the current study is just the tip of an iceberg, these new evidences will provide new insights for possible GBM treatments. In this review, we summarize the recent studies about RNA modifications, such as N 6-methyladenosine (m 6A), N 6,2′O-dimethyladenosine (m 6A m), 5-methylcytosine (m 5C), N 1-methyladenosine (m 1A), inosine (I) and pseudouridine (ψ) as well as the corresponding RMPs including the writers, erasers and readers that participate in the tumorigenesis and development of GBM, so as to provide some clues for GBM treatment.

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          Most cited references122

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          An Integrative Model of Cellular States, Plasticity, and Genetics for Glioblastoma

          Diverse genetic, epigenetic and developmental programs drive glioblastoma, an incurable and poorly understood tumor, but their precise characterization remains challenging. Here we use an integrative approach spanning single-cell RNA-sequencing of 28 tumors, bulk genetic and expression analysis of 401 specimens from the TCGA, functional approaches and single-cell lineage tracing to derive a unified model of cellular states and genetic diversity in glioblastoma. We find that malignant cells in glioblastoma exist in four main cellular states that recapitulate distinct neural cell types, are influenced by the tumor microenvironment, and exhibit plasticity. The relative frequency of cells in each state varies between glioblastoma samples and is influenced by copy number amplifications of the CDK4 , EGFR and PDGFRA loci, and by mutations in the NF1 locus, that each favor a defined state. Our work provides a blueprint for glioblastoma, integrating the malignant cell programs, their plasticity and their modulation by genetic drivers.
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            Rethinking m6A Readers, Writers, and Erasers.

            In recent years, m6A has emerged as an abundant and dynamically regulated modification throughout the transcriptome. Recent technological advances have enabled the transcriptome-wide identification of m6A residues, which in turn has provided important insights into the biology and regulation of this pervasive regulatory mark. Also central to our current understanding of m6A are the discovery and characterization of m6A readers, writers, and erasers. Over the last few years, studies into the function of these proteins have led to important discoveries about the regulation and function of m6A. However, during this time our understanding of these proteins has also evolved considerably, sometimes leading to the reversal of early concepts regarding the reading, writing and erasing of m6A. In this review, we summarize recent advances in m6A research, and we highlight how these new findings have reshaped our understanding of how m6A is regulated in the transcriptome.
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              Advances in epigenetics link genetics to the environment and disease

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                Author and article information

                Journal
                Cancers (Basel)
                Cancers (Basel)
                cancers
                Cancers
                MDPI
                2072-6694
                20 March 2020
                March 2020
                : 12
                : 3
                : 736
                Affiliations
                [1 ]State Key Laboratory of Silkworm Genome Biology, Institute of Sericulture and Systems Biology, College of Biotechnology, Southwest University, Beibei, Chongqing 400716, China
                [2 ]Cancer Center, Medical Research Institute, Southwest University, Beibei, Chongqing 400716, China
                [3 ]Engineering Research Center for Cancer Biomedical and Translational Medicine, Southwest University, Beibei, Chongqing 400716, China
                [4 ]Chongqing Engineering and Technology Research Center for Silk Biomaterials and Regenerative Medicine, Southwest University, Beibei, Chongqing 400716, China
                Author notes
                [* ]Correspondence: zdong007@ 123456swu.edu.cn (Z.D.); hcui@ 123456swu.edu.cn (H.C.)
                Author information
                https://orcid.org/0000-0003-3108-0245
                https://orcid.org/0000-0003-1178-1570
                Article
                cancers-12-00736
                10.3390/cancers12030736
                7140112
                32244981
                41268a7f-a9f8-420b-9bd5-f7ecbf0c9e3a
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 06 February 2020
                : 18 March 2020
                Categories
                Review

                m6a,rna modification,glioblastoma,epi-transcriptome,rna processing

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