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      Prognostic value of sequencing-based minimal residual disease detection in patients with multiple myeloma who underwent autologous stem-cell transplantation

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          Abstract

          Background

          Most patients with multiple myeloma (MM) are considered to be incurable, and relapse owing to minimal residual disease (MRD) is the main cause of death among these patients. Therefore, new technologies to assess deeper response are required.

          Patients and methods

          We retrospectively analyzed 125 patients with MM who underwent high-dose melphalan plus autologous stem-cell transplantation (ASCT) to detect MRD in autograft/bone marrow (BM) cells using a next-generation sequencing (NGS)-based method and allele-specific oligonucleotide-polymerase chain reaction (ASO-PCR).

          Results

          NGS-based method was applicable to 90% and this method had at least one to two logs greater sensitivity compared to ASO-PCR. MRD negative by NGS [MRD NGS(−)] (defined as <10 −6) in post-ASCT BM cases ( n = 26) showed a significantly better progression-free survival (PFS) (96% at 4 years, P < 0.001) and overall survival (OS) (100% at 4 years, P =0.04) than MRD NGS(+) in post-ASCT BM cases ( n = 25). When restricting the analysis to the 39 complete response cases, patients who were MRD NGS(−) ( n = 24) showed a significantly better PFS than those that were MRD NGS(+) ( n = 15) ( P =0.02). Moreover, MRD NGS(−) in post-ASCT BM cases ( n = 12) showed significantly a better PFS than MRD NGS(+) cases ( n = 7) where MRD was not detected by ASO-PCR ( P = 0.001). Patients whose autografts were negative by NGS-based MRD assessment (<10 −7) ( n = 19) had 92% PFS and 100% OS at 4 years post-ASCT. Conversely, the NGS-based MRD positive patients who received post-ASCT treatment using novel agents ( n = 49) had a significantly better PFS ( P = 0.001) and tended to have a better OS ( P= 0.214) than those that were untreated ( n = 33).

          Conclusions

          Low level MRD detected by NGS-based platform but not ASO-PCR has significant prognostic value when assessing either the autograft product or BM cells post-ASCT.

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          Most cited references11

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          Deep-sequencing approach for minimal residual disease detection in acute lymphoblastic leukemia.

          The persistence of minimal residual disease (MRD) during therapy is the strongest adverse prognostic factor in acute lymphoblastic leukemia (ALL). We developed a high-throughput sequencing method that universally amplifies antigen-receptor gene segments and identifies all clonal gene rearrangements (ie, leukemia-specific sequences) at diagnosis, allowing monitoring of disease progression and clonal evolution during therapy. In the present study, the assay specifically detected 1 leukemic cell among greater than 1 million leukocytes in spike-in experiments. We compared this method with the gold-standard MRD assays multiparameter flow cytometry and allele-specific oligonucleotide polymerase chain reaction (ASO-PCR) using diagnostic and follow-up samples from 106 patients with ALL. Sequencing detected MRD in all 28 samples shown to be positive by flow cytometry and in 35 of the 36 shown to be positive by ASO-PCR and revealed MRD in 10 and 3 additional samples that were negative by flow cytometry and ASO-PCR, respectively. We conclude that this new method allows monitoring of treatment response in ALL and other lymphoid malignancies with great sensitivity and precision. The www.clinicaltrials.gov identifier number for the Total XV study is NCT00137111.
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            Next-generation sequencing and real-time quantitative PCR for minimal residual disease detection in B-cell disorders.

            In this study, we compared immunoglobulin heavy-chain-gene-based minimal residual disease (MRD) detection by real-time quantitative PCR (RQ-PCR) and next-generation sequencing (NGS) to assess whether NGS could overcome some limitations of RQ-PCR and further increase sensitivity, specificity, accuracy and reproducibility. In total, 378 samples from 55 patients with acute lymphoblastic leukemia (ALL), mantle cell lymphoma (MCL) or multiple myeloma (MM) were investigated for clonotype identification, clonotype identity and comparability of MRD results. Forty-five clonotypes were identified by RQ-PCR and 49 by NGS. Clonotypes identified by both tools were identical or >97% homologous in 96% of cases. Both tools were able to routinely reach a sensitivity level of 1 × E-05. A good correlation of MRD results was observed (R=0.791, P<0.001), with excellent concordance in 79.6% of cases. Few discordant cases were observed across all disease subtypes. NGS showed at least the same level of sensitivity as allele-specific oligonucleotides-PCR, without the need for patient-specific reagents. We conclude that NGS is an effective tool for MRD monitoring in ALL, MCL and MM. Prospective comparative analysis of unselected cases is required to validate the clinical impact of NGS-based MRD assessment.
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              A solution to the problem of monotone likelihood in Cox regression.

              The phenomenon of monotone likelihood is observed in the fitting process of a Cox model if the likelihood converges to a finite value while at least one parameter estimate diverges to +/- infinity. Monotone likelihood primarily occurs in small samples with substantial censoring of survival times and several highly predictive covariates. Previous options to deal with monotone likelihood have been unsatisfactory. The solution we suggest is an adaptation of a procedure by Firth (1993, Biometrika 80, 27-38) originally developed to reduce the bias of maximum likelihood estimates. This procedure produces finite parameter estimates by means of penalized maximum likelihood estimation. Corresponding Wald-type tests and confidence intervals are available, but it is shown that penalized likelihood ratio tests and profile penalized likelihood confidence intervals are often preferable. An empirical study of the suggested procedures confirms satisfactory performance of both estimation and inference. The advantage of the procedure over previous options of analysis is finally exemplified in the analysis of a breast cancer study.
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                Author and article information

                Journal
                Ann Oncol
                Ann. Oncol
                annonc
                Annals of Oncology
                Oxford University Press
                0923-7534
                1569-8041
                October 2017
                27 July 2017
                : 28
                : 10
                : 2503-2510
                Affiliations
                [1 ]Hematology/Respiratory Medicine, Faculty of Medicine, Institute of Medical, Pharmaceutical and Health Sciences, Kanazawa University, Kanazawa;
                [2 ]Department of Hematology, National Hospital Organization Disaster Medical Center of Japan, Tachikawa, Japan;
                [3 ]Adaptive Biotechnologies Corp., South San Francisco, USA;
                [4 ]Division of Internal Medicine, Keiju Kanazawa Hospital, Kanazawa;
                [5 ]Department of Medical Oncology, Iwate Medical University School of Medicine, Morioka;
                [6 ]Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka;
                [7 ]Department of Hematology/Oncology, Tokai University Hachioji Hospital, Hachioji;
                [8 ]Division of Hematology/Oncology, Department of Medicine, Kameda Medical Center, Kamogawa;
                [9 ]Department of Medical Oncology and Hematology, Sapporo Medical University School of Medicine, Sapporo;
                [10 ]Department of Hematology, Toyama Red Cross Hospital, Toyama;
                [11 ]Department of Hematology, Kinki University School of Medicine Nara Hospital, Ikoma, Nara;
                [12 ]Division of Internal Medicine, Toyama City Hospital, Toyama;
                [13 ]Department of Hematology, National Hospital Organization Shibukawa Medical Center, Shibukawa;
                [14 ]Department of Hematology, Shizuoka City Shimizu Hospital, Shizuoka, Japan
                Author notes
                [* ] Correspondence to: Dr Hiroyuki Takamatsu, Hematology/Respiratory Medicine, Faculty of Medicine, Institute of Medical, Pharmaceutical and Health Sciences, Kanazawa University, 13-1 Takaramachi, Kanazawa, Ishikawa 920-8641, Japan. Tel: +81-76-265-2276; E-mail: takamaz@ 123456staff.kanazawa-u.ac.jp
                Article
                mdx340
                10.1093/annonc/mdx340
                5834061
                28945825
                41344d3c-c3be-4d11-a40b-0539933ea52f
                © The Author 2017. Published by Oxford University Press on behalf of the European Society for Medical Oncology.

                This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License ( http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

                History
                Page count
                Pages: 8
                Categories
                Original Articles
                Hematologic Malignancies

                Oncology & Radiotherapy
                next-generation sequencing,minimal residual disease,myeloma,autologous stem-cell transplantation

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