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      Methods for identification of spike patterns in massively parallel spike trains

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          Abstract

          Temporally, precise correlations between simultaneously recorded neurons have been interpreted as signatures of cell assemblies, i.e., groups of neurons that form processing units. Evidence for this hypothesis was found on the level of pairwise correlations in simultaneous recordings of few neurons. Increasing the number of simultaneously recorded neurons increases the chances to detect cell assembly activity due to the larger sample size. Recent technological advances have enabled the recording of 100 or more neurons in parallel. However, these massively parallel spike train data require novel statistical tools to be analyzed for correlations, because they raise considerable combinatorial and multiple testing issues. Recently, various of such methods have started to develop. First approaches were based on population or pairwise measures of synchronization, and later led to methods for the detection of various types of higher-order synchronization and of spatio-temporal patterns. The latest techniques combine data mining with analysis of statistical significance. Here, we give a comparative overview of these methods, of their assumptions and of the types of correlations they can detect.

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          The online version of this article (10.1007/s00422-018-0755-0) contains supplementary material, which is available to authorized users.

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          Most cited references80

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          Large-scale recording of neuronal ensembles.

          How does the brain orchestrate perceptions, thoughts and actions from the spiking activity of its neurons? Early single-neuron recording research treated spike pattern variability as noise that needed to be averaged out to reveal the brain's representation of invariant input. Another view is that variability of spikes is centrally coordinated and that this brain-generated ensemble pattern in cortical structures is itself a potential source of cognition. Large-scale recordings from neuronal ensembles now offer the opportunity to test these competing theoretical frameworks. Currently, wire and micro-machined silicon electrode arrays can record from large numbers of neurons and monitor local neural circuits at work. Achieving the full potential of massively parallel neuronal recordings, however, will require further development of the neuron-electrode interface, automated and efficient spike-sorting algorithms for effective isolation and identification of single neurons, and new mathematical insights for the analysis of network properties.
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            Dimensionality reduction for large-scale neural recordings.

            Most sensory, cognitive and motor functions depend on the interactions of many neurons. In recent years, there has been rapid development and increasing use of technologies for recording from large numbers of neurons, either sequentially or simultaneously. A key question is what scientific insight can be gained by studying a population of recorded neurons beyond studying each neuron individually. Here, we examine three important motivations for population studies: single-trial hypotheses requiring statistical power, hypotheses of population response structure and exploratory analyses of large data sets. Many recent studies have adopted dimensionality reduction to analyze these populations and to find features that are not apparent at the level of individual neurons. We describe the dimensionality reduction methods commonly applied to population activity and offer practical advice about selecting methods and interpreting their outputs. This review is intended for experimental and computational researchers who seek to understand the role dimensionality reduction has had and can have in systems neuroscience, and who seek to apply these methods to their own data.
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              Polychronization: computation with spikes.

              We present a minimal spiking network that can polychronize, that is, exhibit reproducible time-locked but not synchronous firing patterns with millisecond precision, as in synfire braids. The network consists of cortical spiking neurons with axonal conduction delays and spike-timing-dependent plasticity (STDP); a ready-to-use MATLAB code is included. It exhibits sleeplike oscillations, gamma (40 Hz) rhythms, conversion of firing rates to spike timings, and other interesting regimes. Due to the interplay between the delays and STDP, the spiking neurons spontaneously self-organize into groups and generate patterns of stereotypical polychronous activity. To our surprise, the number of coexisting polychronous groups far exceeds the number of neurons in the network, resulting in an unprecedented memory capacity of the system. We speculate on the significance of polychrony to the theory of neuronal group selection (TNGS, neural Darwinism), cognitive neural computations, binding and gamma rhythm, mechanisms of attention, and consciousness as "attention to memories."
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                Author and article information

                Contributors
                p.quaglio@fz-juelich.de
                Journal
                Biol Cybern
                Biol Cybern
                Biological Cybernetics
                Springer Berlin Heidelberg (Berlin/Heidelberg )
                0340-1200
                1432-0770
                12 April 2018
                12 April 2018
                2018
                : 112
                : 1
                : 57-80
                Affiliations
                [1 ]ISNI 0000 0001 2297 375X, GRID grid.8385.6, Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6), JARA Institute Brain Structure-Function Relationships (INM-10), , Jülich Research Centre, ; Jülich, Germany
                [2 ]ISNI 0000 0000 8580 3777, GRID grid.6190.e, Computational Systems Neuroscience, Institute for Zoology, Faculty of Mathematics and Natural Sciences, , University of Cologne, ; Cologne, Germany
                [3 ]Chair of Risk, Safety and Uncertainty Quantification, ETH Zürich, Zurich, Switzerland
                [4 ]Risk Center, ETH Zürich, Zurich, Switzerland
                [5 ]ISNI 0000 0001 0728 696X, GRID grid.1957.a, Theoretical Systems Neurobiology, , RWTH Aachen University, ; Aachen, Germany
                Author notes

                Communicated by Martin Paul Nawrot.

                Author information
                http://orcid.org/0000-0002-8012-3056
                Article
                755
                10.1007/s00422-018-0755-0
                5908877
                29651582
                42286dc1-df0e-41bb-8499-2dec1335f8a1
                © The Author(s) 2018

                Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

                History
                : 9 June 2017
                : 26 March 2018
                Funding
                Funded by: Helmholtz-Gemeinschaft (DE)
                Award ID: SMHB
                Award Recipient :
                Funded by: EC Human Brain Project, HBP
                Award ID: 720270
                Award Recipient :
                Funded by: DFG SPP priority Program 1665
                Award ID: GR 1753/4-2
                Award Recipient :
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                © Springer-Verlag GmbH Germany, part of Springer Nature 2018

                Robotics
                spike synchrony,spatio-temporal spike patterns,correlated point processes,monte carlo methods,data mining

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