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      Preparation and Irreversible Inhibition Mechanism Insight into a Recombinant Kunitz Trypsin Inhibitor from Glycine max L. Seeds

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          Abstract

          Soybean Kunitz trypsin inhibitor (SKTI), extracted from soybean ( Glycine max L.) seeds, possesses insect resistance and anti-tumor properties. But its specific mechanisms of action are not yet known. This article reports an efficient method to produce recombinant SKTI (rSKTI) in Escherichia coli, reveals some biochemical properties of rSKTI, and discusses the inhibition mechanism of SKTI. The rSKTI was expressed as inclusion body in E. coli BL21 (DE3). After refolding, the active rSKTI was obtained and was further purified with anion-exchange chromatography (DEAE-FF) efficiently. There were similar biochemical properties between SKTI and rSKTI. The optimum pH and the optimum temperature were pH 8.0 and 35 °C, respectively, being stable during pH 7.0–11.0 and below 37 °C. The activity against trypsin was inhibited by Co 2+, Mn 2+, Fe 3+, Al 3+, and epoxy chloropropane. Inhibition kinetic assay of SKTI against trypsin as Lineweaver-Burk plots analysis both showed an unchanged K m and a decreased V max with N-benzoyl- l-arginine ethyl ester (BAEE) as substrate. Molecular modeling showed Arg63 of SKTI (active residue of SKTI) that interacts with four residues of trypsin, including three catalytic site (His57, Asp102, and Ser195) and one binding site (Asp189), forming five interactions. These provide reference for understanding the inhibition mechanism of such kind of Kunitz trypsin inhibitors.

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          The online version of this article (10.1007/s12010-020-03254-5) contains supplementary material, which is available to authorized users.

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          Most cited references17

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          CRYSTALLIZATION OF A TRYPSIN INHIBITOR FROM SOYBEAN.

          M. Kunitz (1945)
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            Expression of soybean proteinase inhibitors in transgenic sugarcane plants: effects on natural defense against Diatraea saccharalis

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              Electrostatic complementarity within the substrate-binding pocket of trypsin.

              The aspartic residue (Asp-189) at the base of the substrate-binding pocket of trypsin was replaced by serine (present in a similar position in chymotrypsin) through site-directed mutagenesis. The wild-type (with Asp-189 in the mature trypsin sequence) and mutant (Ser-189) trypsinogens were expressed in Escherichia coli, purified to homogeneity, activated by enterokinase, and tested with a series of fluorogenic tetrapeptide substrates with the general formula succinyl-Ala-Ala-Pro-Xaa-AMC, where AMC is 7-amino-4-methyl-coumarin and Xaa is Lys, Arg, Tyr, Phe, Leu, or Trp. As compared to [Asp189]trypsin, the activity of [Ser189]trypsin on lysyl and arginyl substrates decreased by about 5 orders of magnitude while its Km values increased only 2- to 6-fold. In contrast, [Ser189]trypsin was 10-50 times more active on the less preferred, chymotrypsin-type substrates (tyrosyl, phenylalanyl, leucyl, and tryptophanyl). The activity of [Ser189]trypsin on lysyl substrate was about 100-fold greater at pH 10.5 than at pH 7.0, indicating that the unprotonated lysine is preferred. Assuming the reaction mechanisms of the wild-type and mutant enzymes to be the same, we calculated the changes in the transition-state energies for various enzyme-substrate pairs to reflect electrostatic and hydrogen-bond interactions. The relative binding energies (E) in the transition state are as follows: EII greater than EPP greater than EPA greater than EIP approximately equal to EIA, where I = ionic, P = nonionic but polar, and A = apolar residues in the binding pocket. These side-chain interactions become prominent during the transition of the Michaelis complex to the tetrahedral transition-state complex.
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                Author and article information

                Contributors
                lisuxia@ecust.edu.cn
                Journal
                Appl Biochem Biotechnol
                Appl. Biochem. Biotechnol
                Applied Biochemistry and Biotechnology
                Springer US (New York )
                0273-2289
                1559-0291
                1 February 2020
                1 February 2020
                2020
                : 191
                : 3
                : 1207-1222
                Affiliations
                [1 ]GRID grid.28056.39, ISNI 0000 0001 2163 4895, State Key Laboratory of Bioreactor Engineering, , East China University of Science and Technology, ; Shanghai, 200237 China
                [2 ]Shanghai Yaxin Biotechnology Limited Company, Shanghai, 200231 China
                Article
                3254
                10.1007/s12010-020-03254-5
                7320042
                32006248
                44ec0759-aadb-4957-93ce-c77ed9086fbd
                © The Author(s) 2020

                Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

                History
                : 30 November 2017
                : 5 April 2018
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                © Springer Science+Business Media, LLC, part of Springer Nature 2020

                Biochemistry
                soybean kunitz trypsin inhibitor,protein refolding,biochemical property,inhibition kinetic assay,molecular modeling

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