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      Morquio A Syndrome-Associated Mutations: A Review of Alterations in the GALNS Gene and a New Locus-Specific Database

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          Abstract

          Morquio A syndrome (mucopolysaccharidosis IVA) is an autosomal recessive disorder that results from deficient activity of the enzyme N-acetylgalactosamine-6-sulfatase (GALNS) due to alterations in the GALNS gene, which causes major skeletal and connective tissue abnormalities and effects on multiple organ systems. The GALNS alterations associated with Morquio A are numerous and heterogeneous, and new alterations are continuously identified. To aid detection and interpretation of GALNS alterations, from previously published research, we provide a comprehensive and up-to-date listing of 277 unique GALNS alterations associated with Morquio A identified from 1,091 published GALNS alleles. In agreement with previous findings, most reported GALNS alterations are missense changes and even the most frequent alterations are relatively uncommon. We found that 48% of patients are assessed as homozygous for a GALNS alteration, 39% are assessed as heterozygous for two identified GALNS alterations, and in 13% of patients only one GALNS alteration is detected. We report here the creation of a locus-specific database for the GALNS gene ( http://galns.mutdb.org/) that catalogs all reported alterations in GALNS to date. We highlight the challenges both in alteration detection and genotype–phenotype interpretation caused in part by the heterogeneity of GALNS alterations and provide recommendations for molecular testing of GALNS.

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          Activities at the Universal Protein Resource (UniProt)

          The mission of the Universal Protein Resource (UniProt) (http://www.uniprot.org) is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequences and functional annotation. It integrates, interprets and standardizes data from literature and numerous resources to achieve the most comprehensive catalog possible of protein information. The central activities are the biocuration of the UniProt Knowledgebase and the dissemination of these data through our Web site and web services. UniProt is produced by the UniProt Consortium, which consists of groups from the European Bioinformatics Institute (EBI), the SIB Swiss Institute of Bioinformatics (SIB) and the Protein Information Resource (PIR). UniProt is updated and distributed every 4 weeks and can be accessed online for searches or downloads.
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            The UCSC Genome Browser database: extensions and updates 2013

            The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a wide variety of organisms. The Browser is an integrated tool set for visualizing, comparing, analysing and sharing both publicly available and user-generated genomic datasets. As of September 2012, genomic sequence and a basic set of annotation ‘tracks’ are provided for 63 organisms, including 26 mammals, 13 non-mammal vertebrates, 3 invertebrate deuterostomes, 13 insects, 6 worms, yeast and sea hare. In the past year 19 new genome assemblies have been added, and we anticipate releasing another 28 in early 2013. Further, a large number of annotation tracks have been either added, updated by contributors or remapped to the latest human reference genome. Among these are an updated UCSC Genes track for human and mouse assemblies. We have also introduced several features to improve usability, including new navigation menus. This article provides an update to the UCSC Genome Browser database, which has been previously featured in the Database issue of this journal.
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              Mutation nomenclature extensions and suggestions to describe complex mutations: a discussion.

              Consistent gene mutation nomenclature is essential for efficient and accurate reporting, testing, and curation of the growing number of disease mutations and useful polymorphisms being discovered in the human genome. While a codified mutation nomenclature system for simple DNA lesions has now been adopted broadly by the medical genetics community, it is inherently difficult to represent complex mutations in a unified manner. In this article, suggestions are presented for reporting just such complex mutations. Copyright 2000 Wiley-Liss, Inc.
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                Author and article information

                Journal
                Hum Mutat
                Hum. Mutat
                humu
                Human Mutation
                BlackWell Publishing Ltd (Oxford, UK )
                1059-7794
                1098-1004
                November 2014
                17 September 2014
                : 35
                : 11
                : 1271-1279
                Affiliations
                [1 ]Molecular and Cell Biology Laboratory, Pediatric Neurology Unit and Laboratories, Meyer Children's Hospital Florence, Italy
                [2 ]Department of Neurosciences, Psychology, Pharmacology and Child Health, University of Florence Florence, Italy
                [3 ]The Buck Institute for Research on Aging Novato, California
                [4 ]BioMarin Pharmaceutical Inc. Novato, California
                [5 ]Department of Computer Science, University of San Francisco San Francisco, California
                [6 ]UCSF Benioff Children's Hospital Oakland Oakland, California
                [7 ]Health Interactions Inc. San Francisco, California
                Author notes
                *Correspondence to: Nicole Miller, BioMarin Pharmaceutical Inc., 105 Digital Dr., Novato, CA 94949. E-mail: NMiller@ 123456bmrn.com
                Article
                10.1002/humu.22635
                4238747
                25137622
                45883c15-a0d4-4a78-9883-3e6ed3745de4
                © 2014 The Authors. ** Human Mutation published by Wiley Periodicals, Inc.

                This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.

                History
                : 27 March 2014
                : 06 August 2014
                Categories
                Mutation Update

                Human biology
                mps iva,morquio a,mucopolysaccharidosis type iva,galns,lysosomal storage disorder
                Human biology
                mps iva, morquio a, mucopolysaccharidosis type iva, galns, lysosomal storage disorder

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