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      Fat-regulated adaptor protein Dlish binds the growth suppressor Expanded and controls its stability and ubiquitination

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          To regulate the growth and size of organs, cells can use information from their neighbors to modify intracellular mediators of cell proliferation. The intracellular Hippo pathway is a widely utilized nexus for growth control in animals, but its regulation by extracellular signals is not fully understood. We here identify a pathway that regulates organ size in Drosophila, triggered by the transmembrane receptor, the giant protocadherin Fat. We show that the Fat-regulated SH3 domain adaptor protein Dlish binds to and reduces the stability of the growth suppressor Expanded, a known regulator of the Hippo pathway. The destabilization of Expanded by Dlish works in parallel to a previously established pathway in which Dlish increases levels of the growth-stimulating protein Dachs.

          Abstract

          The Drosophila protocadherin Fat controls organ size through the Hippo pathway, but the biochemical links to the Hippo pathway components are still poorly defined. We previously identified Dlish, an SH3 domain protein that physically interacts with Fat and the type XX myosin Dachs, and showed that Fat’s regulation of Dlish levels and activity helps limit Dachs-mediated inhibition of Hippo pathway activity. We here characterize a parallel growth control pathway downstream of Fat and Dlish. Using immunoprecipitation and mass spectrometry to search for Dlish partners, we find that Dlish binds the FERM domain growth repressor Expanded (Ex); Dlish SH3 domains directly bind sites in the Ex C terminus. We further show that, in vivo, Dlish reduces the subapical accumulation of Ex, and that loss of Dlish blocks the destabilization of Ex caused by loss of Fat. Moreover, Dlish can bind the F-box E3 ubiquitin ligase Slimb and promote Slimb-mediated ubiquitination of Expanded in vitro. Both the in vitro and in vivo effects of Dlish on Ex require Slimb, strongly suggesting that Dlish destabilizes Ex by helping recruit Slimb-containing E3 ubiquitin ligase complexes to Ex.

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          Most cited references37

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          The CRAPome: a Contaminant Repository for Affinity Purification Mass Spectrometry Data

          Affinity purification coupled with mass spectrometry (AP-MS) is now a widely used approach for the identification of protein-protein interactions. However, for any given protein of interest, determining which of the identified polypeptides represent bona fide interactors versus those that are background contaminants (e.g. proteins that interact with the solid-phase support, affinity reagent or epitope tag) is a challenging task. While the standard approach is to identify nonspecific interactions using one or more negative controls, most small-scale AP-MS studies do not capture a complete, accurate background protein set. Fortunately, negative controls are largely bait-independent. Hence, aggregating negative controls from multiple AP-MS studies can increase coverage and improve the characterization of background associated with a given experimental protocol. Here we present the Contaminant Repository for Affinity Purification (the CRAPome) and describe the use of this resource to score protein-protein interactions. The repository (currently available for Homo sapiens and Saccharomyces cerevisiae) and computational tools are freely available online at www.crapome.org.
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            Regulation of the Hedgehog and Wingless signalling pathways by the F-box/WD40-repeat protein Slimb.

            Members of the Hedgehog (Hh) and Wnt/Wingless (Wg) families of secreted proteins control many aspects of growth and patterning during animal development. Hh signal transduction leads to increased stability of a transcription factor, Cubitus interruptus (Ci), whereas Wg signal transduction causes increased stability of Armadillo (Arm/beta-catenin), a possible co-factor for the transcriptional regulator Lef1/TCF. Here we describe a new gene, slimb (for supernumerary limbs), which negatively regulates both of these signal transduction pathways. Loss of function of slimb results in a cell-autonomous accumulation of high levels of both Ci and Arm, and the ectopic expression of both Hh- and Wg- responsive genes. The slimb gene encodes a conserved F-box/WD40-repeat protein related to Cdc4p, a protein in budding yeast that targets cell-cycle regulators for degradation by the ubiquitin/proteasome pathway. We propose that Slimb protein normally targets Ci and Arm for processing or degradation by the ubiquitin/proteasome pathway, and that Hh and Wg regulate gene expression at least in part by inducing changes in Ci and Arm, which protect them from Slimb-mediated proteolysis.
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              Kibra functions as a tumor suppressor protein that regulates Hippo signaling in conjunction with Merlin and Expanded.

              The Hippo signaling pathway regulates organ size and tissue homeostasis from Drosophila to mammals. Central to this pathway is a kinase cascade wherein Hippo (Hpo), in complex with Salvador (Sav), phosphorylates and activates Warts (Wts), which in turn phosphorylates and inactivates the Yorkie (Yki) oncoprotein, known as the YAP coactivator in mammalian cells. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are upstream components that regulate Hpo activity through unknown mechanisms. Here we identify Kibra as another upstream component of the Hippo signaling pathway. We show that Kibra functions together with Mer and Ex in a protein complex localized to the apical domain of epithelial cells, and that this protein complex regulates the Hippo kinase cascade via direct binding to Hpo and Sav. These results shed light on the mechanism of Ex and Mer function and implicate Kibra as a potential tumor suppressor with relevance to neurofibromatosis. Copyright (c) 2010 Elsevier Inc. All rights reserved.
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                Author and article information

                Journal
                Proc Natl Acad Sci U S A
                Proc. Natl. Acad. Sci. U.S.A
                pnas
                pnas
                PNAS
                Proceedings of the National Academy of Sciences of the United States of America
                National Academy of Sciences
                0027-8424
                1091-6490
                22 January 2019
                3 January 2019
                3 January 2019
                : 116
                : 4
                : 1319-1324
                Affiliations
                [1] aCollege of Resources and Environmental Sciences, China Agricultural University , Beijing 100193, China;
                [2] bBeijing Key Laboratory of Biodiversity and Organic Farming , Beijing 100193, China;
                [3] cDepartment of Integrative Biology, University of Wisconsin , Madison, WI 53706;
                [4] dSchool of Life Science, Hunan University of Science and Technology , Xiangtan, Hunan 411201, China;
                [5] eHunan Province Key Laboratory for Integrated Management of Pests and Diseases on Horticultural Crops , Xiangtan, Hunan 411201, China
                Author notes
                2To whom correspondence may be addressed. Email: swwangxing@ 123456cau.edu.cn or ssblair@ 123456wisc.edu .

                Edited by Gary Struhl, Columbia University College of Physicians and Surgeons, New York, NY, and approved December 6, 2018 (received for review July 11, 2018)

                Author contributions: X.W., Y.Z., and S.S.B. designed research; X.W., Y.Z., and S.S.B. performed research; X.W. and Y.Z. contributed new reagents/analytic tools; X.W., Y.Z., and S.S.B. analyzed data; and X.W., Y.Z., and S.S.B. wrote the paper.

                1X.W. and Y.Z. contributed equally to this work.

                Author information
                http://orcid.org/0000-0002-5857-4408
                Article
                201811891
                10.1073/pnas.1811891116
                6347691
                30606799
                4642e292-0783-4bf5-a2fc-dfae437d240c
                Copyright © 2019 the Author(s). Published by PNAS.

                This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND).

                History
                Page count
                Pages: 6
                Funding
                Funded by: HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) 100000065
                Award ID: R01-NS028202
                Award Recipient : Seth S Blair
                Funded by: HHS | NIH | National Institute of General Medical Sciences (NIGMS) 100000057
                Award ID: R01-GM124377
                Award Recipient : Seth S Blair
                Funded by: National Natural Science Foundation of China (NSFC) 501100001809
                Award ID: 31801190
                Award Recipient : Xing Wang
                Categories
                Biological Sciences
                Developmental Biology

                dlish,expanded,fat,hippo signaling,slimb
                dlish, expanded, fat, hippo signaling, slimb

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