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      An Update on Sec61 Channel Functions, Mechanisms, and Related Diseases

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          Abstract

          The membrane of the endoplasmic reticulum (ER) of nucleated human cells harbors the protein translocon, which facilitates membrane integration or translocation of almost every newly synthesized polypeptide targeted to organelles of the endo- and exocytotic pathway. The translocon comprises the polypeptide-conducting Sec61 channel and several additional proteins and complexes that are permanently or transiently associated with the heterotrimeric Sec61 complex. This ensemble of proteins facilitates ER targeting of precursor polypeptides, modification of precursor polypeptides in transit through the Sec61 complex, and Sec61 channel gating, i.e., dynamic regulation of the pore forming subunit to mediate precursor transport and calcium efflux. Recently, cryoelectron tomography of translocons in native ER membrane vesicles, derived from human cell lines or patient fibroblasts, and even intact cells has given unprecedented insights into the architecture and dynamics of the native translocon and the Sec61 channel. These structural data are discussed in light of different Sec61 channel activities including ribosome receptor function, membrane insertion, and translocation of newly synthesized polypeptides as well as the putative physiological roles of the Sec61 channel as a passive ER calcium leak channel. Furthermore, the structural insights into the Sec61 channel are incorporated into an overview and update on Sec61 channel-related diseases—the Sec61 channelopathies—and novel therapeutic concepts for their treatment.

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          Most cited references165

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          Calcium signaling.

          Calcium ions (Ca(2+)) impact nearly every aspect of cellular life. This review examines the principles of Ca(2+) signaling, from changes in protein conformations driven by Ca(2+) to the mechanisms that control Ca(2+) levels in the cytoplasm and organelles. Also discussed is the highly localized nature of Ca(2+)-mediated signal transduction and its specific roles in excitability, exocytosis, motility, apoptosis, and transcription.
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            The endoplasmic reticulum: structure, function and response to cellular signaling

            The endoplasmic reticulum (ER) is a large, dynamic structure that serves many roles in the cell including calcium storage, protein synthesis and lipid metabolism. The diverse functions of the ER are performed by distinct domains; consisting of tubules, sheets and the nuclear envelope. Several proteins that contribute to the overall architecture and dynamics of the ER have been identified, but many questions remain as to how the ER changes shape in response to cellular cues, cell type, cell cycle state and during development of the organism. Here we discuss what is known about the dynamics of the ER, what questions remain, and how coordinated responses add to the layers of regulation in this dynamic organelle.
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              X-ray structure of a protein-conducting channel.

              A conserved heterotrimeric membrane protein complex, the Sec61 or SecY complex, forms a protein-conducting channel, allowing polypeptides to be transferred across or integrated into membranes. We report the crystal structure of the complex from Methanococcus jannaschii at a resolution of 3.2 A. The structure suggests that one copy of the heterotrimer serves as a functional translocation channel. The alpha-subunit has two linked halves, transmembrane segments 1-5 and 6-10, clamped together by the gamma-subunit. A cytoplasmic funnel leading into the channel is plugged by a short helix. Plug displacement can open the channel into an 'hourglass' with a ring of hydrophobic residues at its constriction. This ring may form a seal around the translocating polypeptide, hindering the permeation of other molecules. The structure also suggests mechanisms for signal-sequence recognition and for the lateral exit of transmembrane segments of nascent membrane proteins into lipid, and indicates binding sites for partners that provide the driving force for translocation.
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                Author and article information

                Contributors
                Journal
                Front Physiol
                Front Physiol
                Front. Physiol.
                Frontiers in Physiology
                Frontiers Media S.A.
                1664-042X
                01 November 2017
                2017
                : 8
                : 887
                Affiliations
                [1] 1Competence Center for Molecular Medicine, Saarland University Medical School , Homburg, Germany
                [2] 2Department of Molecular Structural Biology, Max-Planck Institute of Biochemistry , Martinsried, Germany
                [3] 3Center for Bioinformatics, Saarland University , Saarbrücken, Germany
                [4] 4Experimental and Clinical Pharmacology and Toxicology, Saarland University , Homburg, Germany
                [5] 5Bijvoet Center for Biomolecular Research, Utrecht University , Utrecht, Netherlands
                Author notes

                Edited by: Mario Diaz, Universidad de La Laguna, Spain

                Reviewed by: Felipe Simon, Universidad Andrés Bello, Chile; Michael Tamkun, Colorado State University, United States

                *Correspondence: Sven Lang sven.lang@ 123456uni-saarland.de

                This article was submitted to Membrane Physiology and Membrane Biophysics, a section of the journal Frontiers in Physiology

                Article
                10.3389/fphys.2017.00887
                5672155
                29163222
                482f6146-b7a3-4278-8109-3500b45ac290
                Copyright © 2017 Lang, Pfeffer, Lee, Cavalié, Helms, Förster and Zimmermann.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 03 July 2017
                : 19 October 2017
                Page count
                Figures: 9, Tables: 1, Equations: 0, References: 181, Pages: 22, Words: 17781
                Funding
                Funded by: Deutsche Forschungsgemeinschaft 10.13039/501100001659
                Award ID: FO 716/4-1
                Award ID: ZI 234/13-1
                Award ID: SFB 894/A4
                Categories
                Physiology
                Review

                Anatomy & Physiology
                atp import,bip,calcium leakage,endoplasmic reticulum,protein biogenesis,sec61 complex

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