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      Species delimitation and invasion history of the balsam woolly adelgid, Adelges ( Dreyfusia ) piceae (Hemiptera: Aphidoidea: Adelgidae), species complex

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          Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

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            Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

            Summary: The two main functions of bioinformatics are the organization and analysis of biological data using computational resources. Geneious Basic has been designed to be an easy-to-use and flexible desktop software application framework for the organization and analysis of biological data, with a focus on molecular sequences and related data types. It integrates numerous industry-standard discovery analysis tools, with interactive visualizations to generate publication-ready images. One key contribution to researchers in the life sciences is the Geneious public application programming interface (API) that affords the ability to leverage the existing framework of the Geneious Basic software platform for virtually unlimited extension and customization. The result is an increase in the speed and quality of development of computation tools for the life sciences, due to the functionality and graphical user interface available to the developer through the public API. Geneious Basic represents an ideal platform for the bioinformatics community to leverage existing components and to integrate their own specific requirements for the discovery, analysis and visualization of biological data. Availability and implementation: Binaries and public API freely available for download at http://www.geneious.com/basic, implemented in Java and supported on Linux, Apple OSX and MS Windows. The software is also available from the Bio-Linux package repository at http://nebc.nerc.ac.uk/news/geneiousonbl. Contact: peter@biomatters.com
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              adegenet: a R package for the multivariate analysis of genetic markers.

              The package adegenet for the R software is dedicated to the multivariate analysis of genetic markers. It extends the ade4 package of multivariate methods by implementing formal classes and functions to manipulate and analyse genetic markers. Data can be imported from common population genetics software and exported to other software and R packages. adegenet also implements standard population genetics tools along with more original approaches for spatial genetics and hybridization. Stable version is available from CRAN: http://cran.r-project.org/mirrors.html. Development version is available from adegenet website: http://adegenet.r-forge.r-project.org/. Both versions can be installed directly from R. adegenet is distributed under the GNU General Public Licence (v.2).

                Author and article information

                (View ORCID Profile)
                Systematic Entomology
                Syst Entomol
                January 2021
                October 22 2020
                January 2021
                : 46
                : 1
                : 186-204
                [1 ]USDA Forest Service Northern Research Station Hamden CT U.S.A.
                [2 ]Department of Environmental Conservation University of Massachusetts Amherst Amherst MA U.S.A.
                [3 ]Agriculture and Agri‐Food Canada Ottawa Ontario Canada
                [4 ]Department of Geosciences and Natural Resource Management University of Copenhagen Frederiksberg C Denmark
                [5 ]Department of Ecology and Evolutionary Biology Yale University New Haven CT U.S.A.
                [6 ]USDA Forest Service Northern Research Station Newark DE U.S.A.
                © 2021






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