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      Influence of air temperature on proteinase activity and beverage quality in Coffea arabica

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          Abstract

          Fruits were collected from trees of Coffea arabica cv. Obatã grown at Mococa and Adamantina in São Paulo State, Brazil, which are regions with marked differences in air temperature that produce coffee with distinct qualities. Mococa is a cooler location that produces high-quality coffee, whereas coffee from Adamantina is of lower quality. The amino acid and protein contents, amino acid profile, and proteinase activity and type in endosperm protein extracts were analysed. Proteinase genes were identified, and their expression was assayed. All results indicate that temperature plays a role in controlling proteinase activity in coffee endosperm. Proteinase activity was higher in the endosperm of immature fruits from Adamantina, which was correlated with higher amino acid content, changes in the amino acid profile, and increased gene expression. Cysteine proteinases were the main class of proteinases in the protein extracts. These data suggest that temperature plays an important role in coffee quality by altering nitrogen compound composition.

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          Precision Farming: Technologies and Information as Risk-Reduction Tools

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            MEROPS: the peptidase database

            Peptidases, their substrates and inhibitors are of great relevance to biology, medicine and biotechnology. The MEROPS database (http://merops.sanger.ac.uk) aims to fulfil the need for an integrated source of information about these. The database has a hierarchical classification in which homologous sets of peptidases and protein inhibitors are grouped into protein species, which are grouped into families, which are in turn grouped into clans. The classification framework is used for attaching information at each level. An important focus of the database has become distinguishing one peptidase from another through identifying the specificity of the peptidase in terms of where it will cleave substrates and with which inhibitors it will interact. We have collected over 39 000 known cleavage sites in proteins, peptides and synthetic substrates. These allow us to display peptidase specificity and alignments of protein substrates to give an indication of how well a cleavage site is conserved, and thus its probable physiological relevance. While the number of new peptidase families and clans has only grown slowly the number of complete genomes has greatly increased. This has allowed us to add an analysis tool to the relevant species pages to show significant gains and losses of peptidase genes relative to related species.
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              Evaluation of coffee reference genes for relative expression studies by quantitative real-time RT-PCR

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                Author and article information

                Contributors
                Role: ND
                Role: ND
                Role: ND
                Role: ND
                Role: ND
                Role: ND
                Role: ND
                Journal
                rbb
                Brazilian Journal of Botany
                Braz. J. Bot.
                Sociedade Botânica de São Paulo (São Paulo )
                1806-9959
                2012
                : 35
                : 4
                : 357-376
                Affiliations
                [1 ] Universidade Estadual de Campinas Brazil
                [2 ] Instituto Agronômico Brazil
                [3 ] Instituto Agronômico Brazil
                [4 ] Instituto de Botânica Brazil
                Article
                S0100-84042012000400009
                10.1590/S0100-84042012000400009
                484ab3f4-3db1-40e3-a28e-e001cc0c6135

                http://creativecommons.org/licenses/by/4.0/

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                SciELO Brazil

                Self URI (journal page): http://www.scielo.br/scielo.php?script=sci_serial&pid=0100-8404&lng=en
                Categories
                PLANT SCIENCES

                Plant science & Botany
                amino acids,coffee quality,cysteine proteinase,endosperm,protein
                Plant science & Botany
                amino acids, coffee quality, cysteine proteinase, endosperm, protein

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