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      Phase transition in random adaptive walks on correlated fitness landscapes

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          Abstract

          We study biological evolution on a random fitness landscape where correlations are introduced through a linear fitness gradient of strength \(c\). When selection is strong and mutations rare the dynamics is a directed uphill walk that terminates at a local fitness maximum. We analytically calculate the dependence of the walk length on the genome size \(L\). When the distribution of the random fitness component has an exponential tail we find a phase transition of the walk length \(D\) between a phase at small \(c\) where walks are short \((D \sim \ln L)\) and a phase at large \(c\) where walks are long \((D \sim L)\). For all other distributions only a single phase exists for any \(c > 0\). The considered process is equivalent to a zero temperature Metropolis dynamics for the random energy model in an external magnetic field, thus also providing insight into the aging dynamics of spin glasses.

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          Most cited references6

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          The genetic theory of adaptation: a brief history.

          Theoretical studies of adaptation have exploded over the past decade. This work has been inspired by recent, surprising findings in the experimental study of adaptation. For example, morphological evolution sometimes involves a modest number of genetic changes, with some individual changes having a large effect on the phenotype or fitness. Here I survey the history of adaptation theory, focusing on the rise and fall of various views over the past century and the reasons for the slow development of a mature theory of adaptation. I also discuss the challenges that face contemporary theories of adaptation.
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            Diminishing returns epistasis among beneficial mutations decelerates adaptation.

            Epistasis has substantial impacts on evolution, in particular, the rate of adaptation. We generated combinations of beneficial mutations that arose in a lineage during rapid adaptation of a bacterium whose growth depended on a newly introduced metabolic pathway. The proportional selective benefit for three of the four loci consistently decreased when they were introduced onto more fit backgrounds. These three alleles all reduced morphological defects caused by expression of the foreign pathway. A simple theoretical model segregating the apparent contribution of individual alleles to benefits and costs effectively predicted the interactions between them. These results provide the first evidence that patterns of epistasis may differ for within- and between-gene interactions during adaptation and that diminishing returns epistasis contributes to the consistent observation of decelerating fitness gains during adaptation.
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              An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus.

              The primary impediment to formulating a general theory for adaptive evolution has been the unknown distribution of fitness effects for new beneficial mutations. By applying extreme value theory, Gillespie circumvented this issue in his mutational landscape model for the adaptation of DNA sequences, and Orr recently extended Gillespie's model, generating testable predictions regarding the course of adaptive evolution. Here we provide the first empirical examination of this model, using a single-stranded DNA bacteriophage related to phiX174, and find that our data are consistent with Orr's predictions, provided that the model is adjusted to incorporate mutation bias. Orr's work suggests that there may be generalities in adaptive molecular evolution that transcend the biological details of a system, but we show that for the model to be useful as a predictive or inferential tool, some adjustments for the biology of the system will be necessary.
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                Author and article information

                Journal
                1408.4856

                Evolutionary Biology
                Evolutionary Biology

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