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      pK205R targets the proximal element of IFN-I signaling pathway to assist African swine fever virus to escape host innate immunity at the early stage of infection

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          Abstract

          African swine fever virus (ASFV) is a nuclear cytoplasmic large DNA virus (NCLDV) that causes devastating hemorrhagic diseases in domestic pigs and wild boars, seriously threatening the development of the global pig industry. IFN-I plays an important role in the body’s antiviral response. Similar to other DNA viruses, ASFV has evolved a variety of immune escape strategies to antagonize IFN-I signaling and maintain its proliferation. In this study, we showed that the ASFV early protein pK205R strongly inhibited interferon-stimulated genes (ISGs) as well as the promoter activity of IFN-stimulated regulatory elements (ISREs). Mechanistically, pK205R interacted with the intracellular domains of IFNAR1 and IFNAR2, thereby inhibiting the interaction of IFNAR1/2 with JAK1 and TYK2 and hindering the phosphorylation and nuclear translocation of STATs. Subsequently, we generated a recombinant strain of the ASFV-pK205R point mutation, ASFV-pK205R 7PM. Notably, we detected higher levels of ISGs in porcine alveolar macrophages (PAMs) than in the parental strain during the early stages of ASFV-pK205R 7PM infection. Moreover, ASFV-pK205R 7PM attenuated the inhibitory effect on IFN-I signaling. In conclusion, we identified a new ASFV immunosuppressive protein that increases our understanding of ASFV immune escape mechanisms.

          Author summary

          African Swine fever virus (ASFV) causes a deadly swine disease that originated in Africa and has since spread to Europe, Asia, and Oceania, severely impacting the global pig industry. Although ASFV protein functions have been extensively studied, many remain unknown. pK205R is abundantly expressed during the early stages of ASFV infection and participates in viral replication during the late stages of infection. Our research reveals how pK205R inhibits IFN-I signaling by interacting with IFNAR1 and IFNAR2, blocking downstream signaling. These results improve our understanding of the immune escape process of ASFV, which may have implications for future vaccine development.

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          Most cited references42

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          Regulation of type I interferon responses.

          Type I interferons (IFNs) activate intracellular antimicrobial programmes and influence the development of innate and adaptive immune responses. Canonical type I IFN signalling activates the Janus kinase (JAK)-signal transducer and activator of transcription (STAT) pathway, leading to transcription of IFN-stimulated genes (ISGs). Host, pathogen and environmental factors regulate the responses of cells to this signalling pathway and thus calibrate host defences while limiting tissue damage and preventing autoimmunity. Here, we summarize the signalling and epigenetic mechanisms that regulate type I IFN-induced STAT activation and ISG transcription and translation. These regulatory mechanisms determine the biological outcomes of type I IFN responses and whether pathogens are cleared effectively or chronic infection or autoimmune disease ensues.
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            Antiviral actions of interferons.

            C Samuel (2001)
            Tremendous progress has been made in understanding the molecular basis of the antiviral actions of interferons (IFNs), as well as strategies evolved by viruses to antagonize the actions of IFNs. Furthermore, advances made while elucidating the IFN system have contributed significantly to our understanding in multiple areas of virology and molecular cell biology, ranging from pathways of signal transduction to the biochemical mechanisms of transcriptional and translational control to the molecular basis of viral pathogenesis. IFNs are approved therapeutics and have moved from the basic research laboratory to the clinic. Among the IFN-induced proteins important in the antiviral actions of IFNs are the RNA-dependent protein kinase (PKR), the 2',5'-oligoadenylate synthetase (OAS) and RNase L, and the Mx protein GTPases. Double-stranded RNA plays a central role in modulating protein phosphorylation and RNA degradation catalyzed by the IFN-inducible PKR kinase and the 2'-5'-oligoadenylate-dependent RNase L, respectively, and also in RNA editing by the IFN-inducible RNA-specific adenosine deaminase (ADAR1). IFN also induces a form of inducible nitric oxide synthase (iNOS2) and the major histocompatibility complex class I and II proteins, all of which play important roles in immune response to infections. Several additional genes whose expression profiles are altered in response to IFN treatment and virus infection have been identified by microarray analyses. The availability of cDNA and genomic clones for many of the components of the IFN system, including IFN-alpha, IFN-beta, and IFN-gamma, their receptors, Jak and Stat and IRF signal transduction components, and proteins such as PKR, 2',5'-OAS, Mx, and ADAR, whose expression is regulated by IFNs, has permitted the generation of mutant proteins, cells that overexpress different forms of the proteins, and animals in which their expression has been disrupted by targeted gene disruption. The use of these IFN system reagents, both in cell culture and in whole animals, continues to provide important contributions to our understanding of the virus-host interaction and cellular antiviral response.
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              A diverse array of gene products are effectors of the type I interferon antiviral response

              The type I interferon (IFN) response protects cells from invading viral pathogens. The cellular factors that mediate this defense are the products of interferon-stimulated genes (ISGs). Although hundreds of ISGs have been identified since their discovery over 25 years ago 1,2,3 , only few have been characterized with respect to antiviral activity. For most, little is known about their antiviral potential, their target specificity, and their mechanisms of action. Using an overexpression screening approach, we show that different viruses are targeted by unique sets of ISGs, with each viral species susceptible to multiple antiviral genes with a range of inhibitory activities. To conduct the screen, over 380 ISGs were tested for their ability to inhibit the replication of several important viruses including hepatitis C virus (HCV), yellow fever virus (YFV), West Nile virus (WNV), chikungunya virus (CHIKV), Venezuelan equine encephalitis virus (VEEV), and human immunodeficiency virus (HIV-1). Broadly acting effectors included IRF1, C6orf150, HPSE, RIG-I, MDA5, and IFITM3, while more targeted antiviral specificity was observed with DDX60, IFI44L, IFI6, IFITM2, MAP3K14, MOV10, NAMPT, OASL, RTP4, TREX1, and UNC84B. Combined expression of two-ISG pairs showed additive antiviral effects similar to moderate IFN doses. Mechanistic studies revealed a common theme of translational inhibition for numerous effectors. Several ISGs, including ADAR, FAM46C, LY6E, and MCOLN2, enhanced replication of certain viruses, highlighting another layer of complexity in the highly pleiotropic IFN system.

                Author and article information

                Contributors
                Role: ConceptualizationRole: Funding acquisitionRole: MethodologyRole: SoftwareRole: SupervisionRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Formal analysisRole: SoftwareRole: Writing – original draft
                Role: MethodologyRole: Software
                Role: Formal analysisRole: Investigation
                Role: ConceptualizationRole: MethodologyRole: Software
                Role: Formal analysisRole: MethodologyRole: Software
                Role: MethodologyRole: Software
                Role: InvestigationRole: Methodology
                Role: Supervision
                Role: Funding acquisitionRole: ResourcesRole: Validation
                Role: Funding acquisitionRole: Validation
                Role: Funding acquisitionRole: Validation
                Role: Editor
                Journal
                PLoS Pathog
                PLoS Pathog
                plos
                PLOS Pathogens
                Public Library of Science (San Francisco, CA USA )
                1553-7366
                1553-7374
                15 October 2024
                October 2024
                : 20
                : 10
                : e1012613
                Affiliations
                [1 ] Key Laboratory of Zoonosis Prevention and Control of Guangdong Province, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China
                [2 ] African Swine Fever Regional Laboratory of China (Guangzhou), Guangzhou, China
                [3 ] Research Center for African Swine Fever Prevention and Control, South China Agricultural University, Guangzhou, China
                [4 ] Maoming Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong, China
                [5 ] Key Laboratory of Animal Vaccine Development, Ministry of Agriculture and Rural Affairs, Guangzhou, China
                University of Southern California, UNITED STATES OF AMERICA
                Author notes

                The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0001-8661-6436
                https://orcid.org/0000-0001-8471-6337
                Article
                PPATHOGENS-D-24-01243
                10.1371/journal.ppat.1012613
                11508493
                39405340
                4a1a0180-ca51-47bd-b943-69d38acac990
                © 2024 Huang et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 16 June 2024
                : 24 September 2024
                Page count
                Figures: 10, Tables: 0, Pages: 25
                Funding
                Funded by: National Key Research and Development Program of China
                Award ID: 2021YFD1800100
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100010031, Postdoctoral Research Foundation of China;
                Award ID: 2023M741220
                Award Recipient :
                Funded by: the 16th Batch of Special Grants (Center) from China Postdoctoral Science Foundation
                Award ID: 2023T160232
                Award Recipient :
                Funded by: funder-id http://dx.doi.org/10.13039/501100021171, Basic and Applied Basic Research Foundation of Guangdong Province;
                Award ID: 202201010490
                Award Recipient :
                Funded by: the Research Project of Maoming Laboratory
                Award ID: 2021TDQD002
                Award Recipient :
                Funded by: China Agriculture Research System of MOF and MARA
                Award ID: CARS-35
                Award Recipient :
                This research was funded by the National Key Research and Development Program of China (2021YFD1800100 to H W), the 74th batch of China Postdoctoral Foundation General support (2023M741220 to Z H), the 16th Batch of Special Grants (Center) from China Postdoctoral Science Foundation (2023T160232 to Z H), Guangzhou Basic and Applied Basic Research Foundation (202201010490 to G Z), the Research Project of Maoming Laboratory (2021TDQD002 to L G), and the China Agriculture Research System of MOF and MARA (CARS-35 to G Z). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Molecular Biology
                Molecular Biology Techniques
                Transfection
                Research and Analysis Methods
                Molecular Biology Techniques
                Transfection
                Biology and Life Sciences
                Cell Biology
                Signal Transduction
                Cell Signaling
                Signal Inhibition
                Research and analysis methods
                Specimen preparation and treatment
                Staining
                Nuclear staining
                DAPI staining
                Research and Analysis Methods
                Specimen Preparation and Treatment
                Staining
                Cell Staining
                Research and Analysis Methods
                Specimen Preparation and Treatment
                Staining
                Nuclear Staining
                Biology and life sciences
                Cell biology
                Signal transduction
                Cell signaling
                STAT signaling
                Biology and Life Sciences
                Biochemistry
                Proteins
                Post-Translational Modification
                Phosphorylation
                Biology and life sciences
                Molecular biology
                Molecular biology techniques
                DNA construction
                Plasmid Construction
                Research and analysis methods
                Molecular biology techniques
                DNA construction
                Plasmid Construction
                Custom metadata
                vor-update-to-uncorrected-proof
                2024-10-25
                All data in the article have been uploaded as supporting information.

                Infectious disease & Microbiology
                Infectious disease & Microbiology

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