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      Influence of different irrigation methods on the alfalfa rhizosphere soil fungal communities in an arid region

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          Abstract

          Xinjiang is the largest arid and saline agricultural region in China. The common irrigation methods in this area are traditional flood irrigation and drip irrigation. In this study, we investigated the effects of these two irrigation methods on the fungal diversity, community structures, and functions in alfalfa rhizosphere soil as well as the associated environmental factors in northern Tianshan Mountain (Xinjiang, China). Soil enzyme activities (urease and neutral phosphatase) were significantly higher in the drip-irrigated alfalfa rhizosphere soil than in the flood-irrigated alfalfa rhizosphere soil, whereas the fungal alpha diversity in the drip-irrigated alfalfa rhizosphere soil was significantly lower than that in the flood-irrigated alfalfa rhizosphere soil. Six dominant fungal phyla were identified (>0.1%), with Ascomycota being the most abundant in all soils, followed by Basidiomycota (5.47%), Mortierellomycota (1.07%), Glomeromycota (0.55%), Rozellomycota (0.27%), and Chytridiomycota (0.14%). Ascomycota and Glomeromycota species were significantly less abundant in drip-irrigated alfalfa rhizosphere soil than in flood-irrigated alfalfa rhizosphere soil. A LEFSe analysis identified Cladosporiaceae (20.8%) species as the most abundant marker fungi in drip-irrigated alfalfa rhizosphere soil. Of the 13 fungal functional groups identified on the basis of the functional annotation using the FUNGuild database, Ectomycorrhizal (22.29%) was the primary functional group. Compared with flood irrigation, drip irrigation significantly decreased the relative abundance of Ectomycorrhizal and Arbuscular_Mycorrhizal, while increasing the relative abundance of Plant_Pathogen, although not significantly (P = 0.19). Available potassium was revealed to be the main environmental factor influencing soil enzyme activities, fungal alpha diversity, fungal community structures, and fungal functions in response to the different irrigation methods. In conclusion, drip irrigation may be more appropriate than flood irrigation in the Tianshan dryland agricultural area for enhancing soil enzyme activities, but it may also increase the abundance of plant pathogenic fungi in the soil.

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          Cutadapt removes adapter sequences from high-throughput sequencing reads

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            UPARSE: highly accurate OTU sequences from microbial amplicon reads.

            Amplified marker-gene sequences can be used to understand microbial community structure, but they suffer from a high level of sequencing and amplification artifacts. The UPARSE pipeline reports operational taxonomic unit (OTU) sequences with ≤1% incorrect bases in artificial microbial community tests, compared with >3% incorrect bases commonly reported by other methods. The improved accuracy results in far fewer OTUs, consistently closer to the expected number of species in a community.
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              FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: SoftwareRole: Writing – original draft
                Role: SoftwareRole: Writing – review & editing
                Role: Data curationRole: SoftwareRole: Writing – review & editing
                Role: SoftwareRole: Writing – review & editing
                Role: SoftwareRole: Writing – review & editing
                Role: SoftwareRole: Writing – review & editing
                Role: Formal analysisRole: Funding acquisitionRole: SoftwareRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS One
                plos
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                17 June 2022
                2022
                : 17
                : 6
                : e0268175
                Affiliations
                [1 ] College of Life Sciences, Shihezi University, Shihezi, Xinjiang, China
                [2 ] College of Chemistry and Life Sciences Sichuan Provincial Key Laboratory for Development and Utilization of Characteristic Horticultural Biological Resources, Chengdu Normal University, Chengdu, China
                ICAR-National Rice Research Institute, INDIA
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Author information
                https://orcid.org/0000-0002-2853-9695
                Article
                PONE-D-22-05575
                10.1371/journal.pone.0268175
                9205495
                35714153
                4a2d6fdb-2409-49b3-a37c-f73dbb7f8cd3
                © 2022 Deng et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 25 February 2022
                : 25 April 2022
                Page count
                Figures: 8, Tables: 1, Pages: 18
                Funding
                Funded by: funder-id http://dx.doi.org/10.13039/501100001809, National Natural Science Foundation of China;
                Award ID: 31871568,31560656
                Award Recipient :
                Funded by: Project for Innovative Research Team of Chengdu Normal University
                Award ID: CSCXTD2020A04
                Award Recipient :
                Funded by: Talent introduction project of Chengdu Normal University
                Award ID: YJRC2017-3
                Award Recipient :
                This study was supported by the National Natural Science Foundation of China (31871568,31560656), Project for Innovative Research Team of Chengdu Normal University (CSCXTD2020A04); Talent introduction project of Chengdu Normal University (YJRC2017-3). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article
                Biology and Life Sciences
                Agriculture
                Agricultural Methods
                Agricultural Irrigation
                Drip Irrigation
                Biology and Life Sciences
                Mycology
                Fungal Structure
                Biology and Life Sciences
                Organisms
                Eukaryota
                Plants
                Legumes
                Fabaceae
                Medicago
                Alfalfa
                Biology and Life Sciences
                Organisms
                Eukaryota
                Plants
                Flowering Plants
                Medicago
                Alfalfa
                Biology and Life Sciences
                Agriculture
                Agricultural Soil Science
                Earth Sciences
                Soil Science
                Agricultural Soil Science
                Biology and Life Sciences
                Ecology
                Plant Ecology
                Plant-Environment Interactions
                Rhizosphere
                Ecology and Environmental Sciences
                Ecology
                Plant Ecology
                Plant-Environment Interactions
                Rhizosphere
                Biology and Life Sciences
                Plant Science
                Plant Ecology
                Plant-Environment Interactions
                Rhizosphere
                Biology and Life Sciences
                Ecology
                Community Ecology
                Community Structure
                Ecology and Environmental Sciences
                Ecology
                Community Ecology
                Community Structure
                Biology and Life Sciences
                Organisms
                Eukaryota
                Fungi
                Earth Sciences
                Hydrology
                Flooding
                Custom metadata
                The ITS sequences here can be viewed via NCBI (BioProject: PRJNA786080; BioSample: SAMN23766526 - SAMN23766537).

                Uncategorized
                Uncategorized

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