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Abstract
Background
Western Kentucky University is a member of a select group of colleges and universities
chosen to participate in a national science experiment designed to improve undergraduate
science education. To introduce freshman students to authentic research, the Howard
Hughes Medical Institute’s Science Education Alliance (HHMI SEA) has implemented an
innovative program to introduce genomics into the classroom. The program draws on
themes and techniques from biology, microbiology, molecular biology, genomics and
bioinformatics. The WKU course is called “Genome Discovery and Exploration” (GDE);
WKU Genome Discovery and Exploration Program [http://bioweb.wku.edu/asp/wkungri/].
During the fall semester, students isolate bacterial viruses from the environment
and characterize them using a variety of techniques including DNA analysis and electron
microscopy. Over the winter break, the complete DNA sequence of one of the viruses
isolated by the GDE students is determined. During the spring semester, GDE students
learn how use computer programs (e.g. Consed, Glimmer, Genemark, BLAST and Phamerator)
to identify all the viral genes and to make genome wide comparisons to identify evolutionary
relationships. All course participants and the SEA staff are connected via the internet
to share and analyze data, troubleshoot, and discuss results. Near the end of the
spring semester, HHMI hosts a research symposium for course faculty and one student
from each institution to report on their discoveries and experiences. As unique phages
are characterized on campuses nationwide, students will have the opportunity to publish
their research for the broader scientific community. This hands-on experience with
the tools of Bioinformatics is an outstanding training opportunity and this unique
program has helped the WKU Biology Department create an introductory pipeline to research
experiences that complements our existing and planned instructional programs and allows
freshman to engage in the thrill of discovery.