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      Phylogenetic Relationship Among Wild and Cultivated Grapevine in Sicily: A Hotspot in the Middle of the Mediterranean Basin

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          Abstract

          Grapevine ( Vitis vinifera ssp. sativa) is a perennial crop especially important for wine and fruit production. The species is highly polymorphic with thousands of different varieties selected by farmers and clonally propagated. However, it is still debated whether grapevine domestication from its wild ancestor ( V. vinifera ssp. sylvestris) has been a single event or rather it occurred on multiple occasions during the diffusion of its cultivation across the Mediterranean. Located in the center of the Basin, Sicily is its largest island and has served as a hotspot for all civilizations that have crossed the Mediterranean throughout history. Hundreds of unique grapevine cultivars are still cultivated in Sicily and its surrounding minor islands, though most of them are menaced by extinction. Wild grapevine is also present with isolated populations thriving along riverbanks. With the aim to evaluate the phylogenetic relationships among Sicilian varieties, and to assess the possible contribution of indigenous wild populations to the genetic makeup of cultivated grapevine, we analyzed 170 domestic cultivars and 125 wild plants, collected from 10 different populations, with 23 SSR markers. We also compared our data with published dataset from Eurasia. Results show that Sicilian wild populations are related to the cultivated Sicilian and Italian germplasm, suggesting events of introgression and/or domestication of local varieties.

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          Estimation of average heterozygosity and genetic distance from a small number of individuals.

          M Nei (1978)
          The magnitudes of the systematic biases involved in sample heterozygosity and sample genetic distances are evaluated, and formulae for obtaining unbiased estimates of average heterozygosity and genetic distance are developed. It is also shown that the number of individuals to be used for estimating average heterozygosity can be very small if a large number of loci are studied and the average heterozygosity is low. The number of individuals to be used for estimating genetic distance can also be very small if the genetic distance is large and the average heterozygosity of the two species compared is low.
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            Multiple origins of cultivated grapevine (Vitis vinifera L. ssp. sativa) based on chloroplast DNA polymorphisms.

            The domestication of the Eurasian grape (Vitis vinifera ssp. sativa) from its wild ancestor (Vitis vinifera ssp. sylvestris) has long been claimed to have occurred in Transcaucasia where its greatest genetic diversity is found and where very early archaeological evidence, including grape pips and artefacts of a 'wine culture', have been excavated. Whether from Transcaucasia or the nearby Taurus or Zagros Mountains, it is hypothesized that this wine culture spread southwards and eventually westwards around the Mediterranean basin, together with the transplantation of cultivated grape cuttings. However, the existence of morphological differentiation between cultivars from eastern and western ends of the modern distribution of the Eurasian grape suggests the existence of different genetic contribution from local sylvestris populations or multilocal selection and domestication of sylvestris genotypes. To tackle this issue, we analysed chlorotype variation and distribution in 1201 samples of sylvestris and sativa genotypes from the whole area of the species' distribution and studied their genetic relationships. The results suggest the existence of at least two important origins for the cultivated germplasm, one in the Near East and another in the western Mediterranean region, the latter of which gave rise to many of the current Western European cultivars. Indeed, over 70% of the Iberian Peninsula cultivars display chlorotypes that are only compatible with their having derived from western sylvestris populations.
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              A rapid DNA isolation procedure from small quantities of fresh leaf tissues

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                Author and article information

                Contributors
                Journal
                Front Plant Sci
                Front Plant Sci
                Front. Plant Sci.
                Frontiers in Plant Science
                Frontiers Media S.A.
                1664-462X
                26 November 2019
                2019
                : 10
                : 1506
                Affiliations
                [1]Institute of Biosciences and Bioresources (IBBR), National Research Council of Italy (CNR) , Palermo, Italy
                Author notes

                Edited by: Rosa Arroyo-Garcia, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Spain

                Reviewed by: Roberto Bacilieri, Institut National de la Recherche Agronomique Centre Montpellier, France; Gabriella De Lorenzis, University of Milan, Italy

                *Correspondence: Roberto De Michele, roberto.demichele@ 123456cnr.it ; Francesco Carimi, francesco.carimi@ 123456ibbr.cnr.it

                This article was submitted to Plant Systematics and Evolution, a section of the journal Frontiers in Plant Science

                †Present Address: Roberto De Michele, Institute of Bioscience and Bioresource (CNR), Palermo, Italy; Francesco Carimi, Institute of Bioscience and Bioresource (CNR), Palermo, Italy

                ‡These authors have contributed equally to this work

                Article
                10.3389/fpls.2019.01506
                6888813
                31850016
                4e5c3885-483b-4768-bc3e-d6244b3dcc3b
                Copyright © 2019 De Michele, La Bella, Gristina, Fontana, Pacifico, Garfi, Motisi, Crucitti, Abbate and Carimi

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 29 June 2019
                : 29 October 2019
                Page count
                Figures: 3, Tables: 5, Equations: 0, References: 63, Pages: 14, Words: 7981
                Funding
                Funded by: Assessore Regionale dell'agricoltura, dello Sviluppo Rurale e della Pesca Mediterranea, Regione Siciliana 10.13039/501100009869
                Award ID: Sottomisura 214/2A—Preservazione della biodiversita`: Centri pubblici di conservazione, Grant No. 94750767637)
                Categories
                Plant Science
                Original Research

                Plant science & Botany
                grapevine,vitis vinifera subsp. sativa,vitis vinifera subsp. sylvestris,domestication,ssr

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