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      MMseqs2 desktop and local web server app for fast, interactive sequence searches

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      bioRxiv

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          Abstract

          The MMseqs2 desktop and web server app facilitates interactive sequence searches through custom protein sequence and profile databases on personal workstations. By eliminating MMseqs2's runtime overhead, we reduced response times to a few seconds at sensitivities close to BLAST. The app is easy to install for non-experts. Source code, prebuilt desktop app packages for Windows, macOS and Linux, Docker images for the web server application, and a demo web server are available at https://search.mmseqs.com.

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          Author and article information

          Journal
          bioRxiv
          September 18 2018
          Article
          10.1101/419895
          4e8e3da9-91d2-4bea-9977-3eaa996dd4bf
          © 2018
          History

          Quantitative & Systems biology,Biophysics
          Quantitative & Systems biology, Biophysics

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