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      A review of gorgonian coral species (Cnidaria, Octocorallia, Alcyonacea) held in the Santa Barbara Museum of Natural History research collection: focus on species from Scleraxonia, Holaxonia, and Calcaxonia – Part I: Introduction, species of Scleraxonia and Holaxonia (Family Acanthogorgiidae)

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          Abstract

          Abstract

          Gorgonian specimens collected from the California Bight (northeastern Pacific Ocean) and adjacent areas held in the collection of the Santa Barbara Museum of Natural History ( SBMNH) were reviewed and evaluated for species identification; much of this material is of historic significance as a large percentage of the specimens were collected by the Allan Hancock Foundation (AHF) ‘Velero’ Expeditions of 1931–1941 and 1948–1985. Examination and reorganization of this collection began early in 2002; initially, it was estimated that at most, twelve to fifteen species of gorgonian could be found within the Bight. Following collection evaluation, it was determined that at a minimum, approximately twenty three genera, encompassing some forty-plus species, of gorgonian coral have been found living within the California Bight region, often extending some distance into adjacent geographical areas both north and south. All species from the California Bight in the collection are discussed to some degree (in three separate parts, this being Part I), with digital images of both colony form and sclerite composition provided for most. Collection specimens from the suborders and families covered in Part I are not extensive, but several genera are featured that have not been previously reported for the California Bight region. Additionally, a potential new species (genus Sibogagorgia Stiasny, 1937) from the Paragorgiidae is described in Part I. Overall, the collection displays an emphasis on species belonging to the Holaxonia , particularly the plexaurids. A brief discussion of a California Bight grouping, referred to as the “red whips,” is presented in Part II; this grouping encompasses several species with very similar colony appearance across a number of genera. A new species (a whip or thread-like form) in the genus Eugorgia Verrill, 1868, belonging to the Gorgoniidae , is described in Part II. The genus Swiftia Duchassaing & Michelotti, 1864 is one of the most challenging taxon groups represented; those species in the genus Swiftia collected within the California Bight are discussed fully, based on SBMNH (and other) specimens in Part III. Scanning electron microscopy images for species of Swiftia from the California coast have rarely, if ever, been published and are included, with a discussion of the geographic range of the genus in the eastern Pacific, from the southern boundary of the California Bight to the Bering Sea, Alaska. Finally, specimens of the genus Thesea Duchassaing & Michelotti, 1860, displaying a whip or thread-like body form, are discussed at a preliminary level in Part III; they also presented challenges to a clear understanding of their taxonomy. While Part I focuses on species of Scleraxonia and those of the Holaxonia in the Acanthogorgiidae family held in the SBMNH collection, all three parts taken together represent the first comprehensive work that reviews the research collection of SBMNH, which focuses on species of gorgonian coral known to inhabit the California Bight.

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          Ocean acidification may increase calcification rates, but at a cost.

          Ocean acidification is the lowering of pH in the oceans as a result of increasing uptake of atmospheric carbon dioxide. Carbon dioxide is entering the oceans at a greater rate than ever before, reducing the ocean's natural buffering capacity and lowering pH. Previous work on the biological consequences of ocean acidification has suggested that calcification and metabolic processes are compromised in acidified seawater. By contrast, here we show, using the ophiuroid brittlestar Amphiura filiformis as a model calcifying organism, that some organisms can increase the rates of many of their biological processes (in this case, metabolism and the ability to calcify to compensate for increased seawater acidity). However, this upregulation of metabolism and calcification, potentially ameliorating some of the effects of increased acidity comes at a substantial cost (muscle wastage) and is therefore unlikely to be sustainable in the long term.
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            Biological structures as a source of habitat heterogeneity and biodiversity on the deep ocean margins

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              Limitations of mitochondrial gene barcoding in Octocorallia.

              The widespread assumption that COI and other mitochondrial genes will be ineffective DNA barcodes for anthozoan cnidarians has not been well tested for most anthozoans other than scleractinian corals. Here we examine the limitations of mitochondrial gene barcoding in the sub-class Octocorallia, a large, diverse, and ecologically important group of anthozoans. Pairwise genetic distance values (uncorrected p) were compared for three candidate barcoding regions: the Folmer region of COI; a fragment of the octocoral-specific mitochondrial protein-coding gene, msh1; and an extended barcode of msh1 plus COI with a short, adjacent intergenic region (igr1). Intraspecific variation was <0.5%, with most species exhibiting no variation in any of the three gene regions. Interspecific divergence was also low: 18.5% of congeneric morphospecies shared identical COI barcodes, and there was no discernible barcoding gap between intra- and interspecific p values. In a case study to assess regional octocoral biodiversity, COI and msh1 barcodes each identified 70% of morphospecies. In a second case study, a nucleotide character-based analysis correctly identified 70% of species in the temperate genus Alcyonium. Although interspecific genetic distances were 2× greater for msh1 than COI, each marker identified similar numbers of species in the two case studies, and the extended COI + igr1 + msh1 barcode more effectively discriminated sister taxa in Alcyonium. Although far from perfect for species identification, a COI + igr1 + msh1 barcode nonetheless represents a valuable addition to the depauperate set of characters available for octocoral taxonomy. © 2010 Blackwell Publishing Ltd.
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                Author and article information

                Contributors
                Journal
                Zookeys
                Zookeys
                2
                urn:lsid:arphahub.com:pub:45048d35-bb1d-5ce8-9668-537e44bd4c7e
                urn:lsid:zoobank.org:pub:91BD42D4-90F1-4B45-9350-EEF175B1727A
                ZooKeys
                Pensoft Publishers
                1313-2989
                1313-2970
                2019
                04 July 2019
                : 860
                : 1-66
                Affiliations
                [1 ] Westmont College, 955 La Paz Road, Santa Barbara, California 93108 USA Westmont College Santa Barbara United States of America
                [2 ] Invertebrate Laboratory, Santa Barbara Museum of Natural History, 2559 Puesta del Sol Road, Santa Barbara, California 93105, USA Santa Barbara Museum of Natural History Santa Barbara United States of America
                Author notes
                Corresponding author: Elizabeth Anne Horvath ( horvath@ 123456westmont.edu )

                Academic editor: James Reimer

                Article
                19961 urn:lsid:arphahub.com:pub:deeac5d4-5959-57df-807a-3cbf2cf4bbb1 urn:lsid:zoobank.org:pub:11140DC9-9744-4A47-9EC8-3AF9E2891BAB
                10.3897/zookeys.860.19961
                6624213
                31327927
                4f2fdfdc-4fff-49af-8639-67e77777fa4b
                Elizabeth Anne Horvath

                This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 01 August 2017
                : 25 March 2019
                Categories
                Monograph
                Alcyonacea
                Animalia
                Anthozoa
                Cnidaria
                Invertebrata
                Systematics
                Cenozoic
                Neogene
                Oceans
                Pacific Ocean

                Animal science & Zoology
                allan hancock foundation (ahf) – ‘velero’ expeditions,museum collection,new species,“red whips”,soft corals, swiftia ,“thread-like” forms,animalia,alcyonacea,anthothelidae,paragorgiidae,coralliidae,acanthogorgiidae

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