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      Controlling HIV-1: Non-Coding RNA Gene Therapy Approaches to a Functional Cure

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          Abstract

          The current treatment strategy for HIV-1 involves prolonged and intensive combined antiretroviral therapy (cART), which successfully suppresses plasma viremia. It has transformed HIV-1 infection into a chronic disease. However, despite the success of cART, a latent form of HIV-1 infection persists as integrated provirus in resting memory CD4 + T cells. Virus can reactivate from this reservoir upon cessation of treatment, and hence HIV requires lifelong therapy. The reservoir represents a major barrier to eradication. Understanding molecular mechanisms regulating HIV-1 transcription and latency are crucial to develop alternate treatment strategies, which impact upon the reservoir and provide a path toward a “functional cure” in which there is no detectable viremia in the absence of cART. Numerous reports have suggested ncRNAs are involved in regulating viral transcription and latency. This review will discuss the latest developments in ncRNAs, specifically short interfering (si)RNA and short hairpin (sh)RNA, targeting molecular mechanisms of HIV-1 transcription, which may represent potential future therapeutics. It will also briefly address animal models for testing potential therapeutics and current gene therapy clinical trials.

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          Most cited references56

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          Rapid turnover of plasma virions and CD4 lymphocytes in HIV-1 infection.

          Treatment of infected patients with ABT-538, an inhibitor of the protease of human immunodeficiency virus type 1 (HIV-1), causes plasma HIV-1 levels to decrease exponentially (mean half-life, 2.1 +/- 0.4 days) and CD4 lymphocyte counts to rise substantially. Minimum estimates of HIV-1 production and clearance and of CD4 lymphocyte turnover indicate that replication of HIV-1 in vivo is continuous and highly productive, driving the rapid turnover of CD4 lymphocytes.
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            HIV reproducibly establishes a latent infection after acute infection of T cells in vitro.

            The presence of latent reservoirs has prevented the eradication of human immunodeficiency virus (HIV) from infected patients successfully treated with anti-retroviral therapy. The mechanism of postintegration latency is poorly understood, partly because of the lack of an in vitro model. We have used an HIV retroviral vector or a full-length HIV genome expressing green fluorescent protein to infect a T lymphocyte cell line in vitro and highly enrich for latently infected cells. HIV latency occurred reproducibly, albeit with low frequency, during an acute infection. Clonal cell lines derived from latent populations showed no detectable basal expression, but could be transcriptionally activated after treatment with phorbol esters or tumor necrosis factor alpha. Direct sequencing of integration sites demonstrated that latent clones frequently contain HIV integrated in or close to alphoid repeat elements in heterochromatin. This is in contrast to a productive infection where integration in or near heterochromatin is disfavored. These observations demonstrate that HIV can reproducibly establish a latent infection as a consequence of integration in or near heterochromatin.
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              HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time.

              A new mathematical model was used to analyze a detailed set of human immunodeficiency virus-type 1 (HIV-1) viral load data collected from five infected individuals after the administration of a potent inhibitor of HIV-1 protease. Productively infected cells were estimated to have, on average, a life-span of 2.2 days (half-life t 1/2 = 1.6 days), and plasma virions were estimated to have a mean life-span of 0.3 days (t 1/2 = 0.24 days). The estimated average total HIV-1 production was 10.3 x 10(9) virions per day, which is substantially greater than previous minimum estimates. The results also suggest that the minimum duration of the HIV-1 life cycle in vivo is 1.2 days on average, and that the average HIV-1 generation time--defined as the time from release of a virion until it infects another cell and causes the release of a new generation of viral particles--is 2.6 days. These findings on viral dynamics provide not only a kinetic picture of HIV-1 pathogenesis, but also theoretical principles to guide the development of treatment strategies.
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                Author and article information

                Contributors
                URI : http://frontiersin.org/people/u/186976
                Journal
                Front Immunol
                Front Immunol
                Front. Immunol.
                Frontiers in Immunology
                Frontiers Media S.A.
                1664-3224
                16 September 2015
                2015
                : 6
                : 474
                Affiliations
                [1] 1The Kirby Institute, UNSW Australia , Sydney, NSW, Australia
                [2] 2Immunovirology Laboratory, St. Vincent’s Centre for Applied Medical Research , Darlinghurst, NSW, Australia
                [3] 3Calimmune Inc. , Darlinghurst, NSW, Australia
                Author notes

                Edited by: Lucy Dorrell, University of Oxford, UK

                Reviewed by: Clive Maurice Gray, University of Cape Town, South Africa; Aurelio Cafaro, Istituto Superiore di Sanità, Italy

                *Correspondence: Chantelle L. Ahlenstiel, The Kirby Institute, University of New South Wales (UNSW) Australia, Sydney, NSW 2052, Australia, cahlenstiel@ 123456kirby.unsw.edu.au

                Specialty section: This article was submitted to HIV and AIDS, a section of the journal Frontiers in Immunology

                Article
                10.3389/fimmu.2015.00474
                4584958
                26441979
                4f474474-6c3e-45be-a42a-d6edd2bf43b5
                Copyright © 2015 Ahlenstiel, Suzuki, Marks, Symonds and Kelleher.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 08 April 2015
                : 31 August 2015
                Page count
                Figures: 1, Tables: 1, Equations: 0, References: 87, Pages: 9, Words: 7103
                Categories
                Immunology
                Mini Review

                Immunology
                hiv-1 transcription,latency,non-coding rna,sirna,shrna,humanized mouse model,gene therapy,clinical trials

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