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      Routine surveillance for the identification of drug resistant Tuberculosis in Tanzania: A cross-sectional study of stakeholders’ perceptions

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          Abstract

          Background

          Routine surveillance is required to monitor the performance of tuberculosis diagnostic programme and is essential for the rapid detection of drug resistance. The main objective of this study was to explore the effectiveness and stakeholder perception of the current routine surveillance system for previously treated tuberculosis cases in Tanzania with a view to identify interventions to improve and accelerate positive patient outcomes.

          Methods

          A study using quantitative and qualitative methods of data collection including in-depth interviews and focus group discussions with health care service providers was conducted in four regions. Quantitative data were extracted from the routine databases to assess performance.

          Results

          Quantitative findings from 2011 to 2013 showed 2,750 specimens from previously treated TB cases were received at the reference laboratory. The number increased year on year, but even in the most recent year was only 61% of that expected. The median and interquartile range of turnaround time in days from specimen reception to results reported for smear microscopy, culture and drug susceptibility testing were 1(1, 1), 61(43, 71) and 129(72, 170) respectively. Contaminated specimens were reported in 3.6% of cases. The qualitative analysis showed the system of sending specimens using postal services was seen to be efficient by participants. However, there were many challenges and significant delays in specimens reaching the reference laboratory associated with lack of funds to transfer specimens, weak form completion, inadequate training and poor supervision. These all adversely affected the implementation of the routine surveillance system.

          Conclusions

          Many issues limit the effectiveness of the routine surveillance system in Tanzania. Priority areas for strengthening are; specimen transportation, supervision and availability of commodities. A pilot study of a revised routine surveillance system that takes into account the observations from this study alongside improved access to drug susceptibility testing using Xpert MTB/RIF should be considered.

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          Most cited references10

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          Sampling Methods in Research Methodology; How to Choose a Sampling Technique for Research

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            National anti-tuberculosis drug resistance study in Tanzania.

            To assess the prevalence of anti-tuberculosis drug resistance in a national representative sample of tuberculosis (TB) patients in Tanzania according to recommended methodology. Cluster survey, with 40 clusters sampled proportional to size, of notified TB patients from all diagnostic centres in the country. The survey enrolled 1019 new and 148 retreatment patients. The adjusted prevalence of Mycobacterium tuberculosis strains resistant to any of the four first-line drugs in new patients was 8.3%, while the prevalence of multidrug-resistant TB (MDR-TB) was 1.1%. In retreatment patients, the crude prevalence for any resistance and for MDR-TB was respectively 20.6% and 3.9%. The prevalence of drug resistance did not differ in relapse patients compared to failure patients. These estimates are among the lowest in those African countries with an estimated level of drug resistance in the last 5 years. The low levels of drug resistance in Tanzania are likely due to a well performing TB control programme and the absence of noticeable involvement of the private sector in TB treatment.
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              Using a bus service for transporting sputum specimens to the Central Reference Laboratory: effect on the routine TB culture service in Malawi.

              All non-private hospitals in Malawi that registered TB cases in 2001, during which there was a bus service for transporting sputum specimens to the Central Reference Laboratory (CRL) for mycobacterial culture and drug sensitivity testing (CDST). To determine the performance of the system of collecting and processing sputum specimens from patients with recurrent smear-positive pulmonary TB through to CDST. Structured interviews with TB Officers, and retrospective data collection using TB and laboratory registers. There were 964 patients with recurrent smear-positive PTB. TB Officers took responsibility for collecting and transporting sputum to the CRL, and 73% reported using the bus service. Sputum specimens from 384 (40%) patients arrived at the CRL. Of these, 40% were found to have negative concentrated smears at the CRL, and 36% of specimen sets arriving at CRL were successfully cultured for DST. Most specimens had been collected after the start of anti-tuberculosis treatment. Although delays in collection adversely affected culture, only 43% of specimen sets collected on or before the first day of treatment yielded Mycobacterium tuberculosis. Problems were identified at all stages of the system and strategies to remedy these are being put in place.
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                Author and article information

                Contributors
                Role: ConceptualizationRole: Data curationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Project administrationRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: ConceptualizationRole: Project administrationRole: SupervisionRole: VisualizationRole: Writing – review & editing
                Role: ConceptualizationRole: Data curationRole: Project administrationRole: SupervisionRole: VisualizationRole: Writing – review & editing
                Role: SupervisionRole: Writing – review & editing
                Role: VisualizationRole: Writing – review & editing
                Role: ConceptualizationRole: Formal analysisRole: InvestigationRole: MethodologyRole: Project administrationRole: SupervisionRole: ValidationRole: VisualizationRole: Writing – original draftRole: Writing – review & editing
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, CA USA )
                1932-6203
                22 February 2019
                2019
                : 14
                : 2
                : e0212421
                Affiliations
                [1 ] Ministry of Health, Community Development, Gender, Elderly and Children; National Tuberculosis and Leprosy Programme, Dar es Salaam, Tanzania
                [2 ] Liverpool School of Tropical Medicine, Centre for Applied Health Research and Delivery, Liverpool, United Kingdom
                [3 ] National Institutes for Medical Research, Muhimbili Medical Research Centre, Dar es Salaam, Tanzania
                Vietnam NTP, VIETNAM
                Author notes

                Competing Interests: The authors have declared that no competing interests exists.

                ‡ These authors also contributed equally to this work.

                Author information
                http://orcid.org/0000-0001-8197-1391
                Article
                PONE-D-17-31576
                10.1371/journal.pone.0212421
                6386308
                30794620
                507144d4-3844-47ce-9c07-6c4ce223ff89
                © 2019 Doulla et al

                This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 1 September 2017
                : 1 February 2019
                Page count
                Figures: 2, Tables: 6, Pages: 16
                Funding
                Funded by: Ministry of Health Community Development, Gender, Elderly and Children
                Award Recipient :
                The study is funded by the Swiss Tropical and Public Health Institute, Basel, Geneva and the Ministry of Health through the World Bank support in Tanzania.
                Categories
                Research Article
                Medicine and Health Sciences
                Infectious Diseases
                Bacterial Diseases
                Tuberculosis
                Medicine and Health Sciences
                Tropical Diseases
                Tuberculosis
                Medicine and Health Sciences
                Infectious Diseases
                Bacterial Diseases
                Tuberculosis
                Extensively Drug-Resistant Tuberculosis
                Medicine and Health Sciences
                Tropical Diseases
                Tuberculosis
                Extensively Drug-Resistant Tuberculosis
                Medicine and Health Sciences
                Pharmacology
                Drug Screening
                Research and Analysis Methods
                Specimen Preparation and Treatment
                Engineering and Technology
                Transportation
                Medicine and Health Sciences
                Diagnostic Medicine
                Tuberculosis Diagnosis and Management
                Research and Analysis Methods
                Research Facilities
                Research Laboratories
                Government Laboratories
                People and Places
                Geographical Locations
                Africa
                Tanzania
                Custom metadata
                Data is available from figshare: https://doi.org/10.6084/m9.figshare.7701458.

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                Uncategorized

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