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      Fighting microbial drug resistance: a primer on the role of evolutionary biology in public health

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          Abstract

          Although microbes have been evolving resistance to antimicrobials for millennia, the spread of resistance in pathogen populations calls for the development of new drugs and treatment strategies. We propose that successful, long-term resistance management requires a better understanding of how resistance evolves in the first place. This is an opportunity for evolutionary biologists to engage in public health, a collaboration that has substantial precedent. Resistance evolution has been an important tool for developing and testing evolutionary theory, especially theory related to the genetic basis of new traits and constraints on adaptation. The present era is no exception. The articles in this issue highlight the breadth of current research on resistance evolution and also its challenges. In this introduction, we review the conceptual advances that have been achieved from studying resistance evolution and describe a path forward.

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          The comprehensive antibiotic resistance database.

          The field of antibiotic drug discovery and the monitoring of new antibiotic resistance elements have yet to fully exploit the power of the genome revolution. Despite the fact that the first genomes sequenced of free living organisms were those of bacteria, there have been few specialized bioinformatic tools developed to mine the growing amount of genomic data associated with pathogens. In particular, there are few tools to study the genetics and genomics of antibiotic resistance and how it impacts bacterial populations, ecology, and the clinic. We have initiated development of such tools in the form of the Comprehensive Antibiotic Research Database (CARD; http://arpcard.mcmaster.ca). The CARD integrates disparate molecular and sequence data, provides a unique organizing principle in the form of the Antibiotic Resistance Ontology (ARO), and can quickly identify putative antibiotic resistance genes in new unannotated genome sequences. This unique platform provides an informatic tool that bridges antibiotic resistance concerns in health care, agriculture, and the environment.
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            Call of the wild: antibiotic resistance genes in natural environments.

            Antibiotic-resistant pathogens are profoundly important to human health, but the environmental reservoirs of resistance determinants are poorly understood. The origins of antibiotic resistance in the environment is relevant to human health because of the increasing importance of zoonotic diseases as well as the need for predicting emerging resistant pathogens. This Review explores the presence and spread of antibiotic resistance in non-agricultural, non-clinical environments and demonstrates the need for more intensive investigation on this subject.
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              Antibiotics and antibiotic resistance genes in natural environments.

              The large majority of antibiotics currently used for treating infections and the antibiotic resistance genes acquired by human pathogens each have an environmental origin. Recent work indicates that the function of these elements in their environmental reservoirs may be very distinct from the "weapon-shield" role they play in clinical settings. Changes in natural ecosystems, including the release of large amounts of antimicrobials, might alter the population dynamics of microorganisms, including selection of resistance, with consequences for human health that are difficult to predict.
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                Author and article information

                Journal
                Evol Appl
                Evol Appl
                eva
                Evolutionary Applications
                Blackwell Publishing Ltd (Oxford, UK )
                1752-4571
                1752-4571
                March 2015
                23 March 2015
                : 8
                : 3
                : 211-222
                Affiliations
                [1 ]Department of Biology, Bard College Annandale-on-Hudson, NY, USA
                [2 ]Department of Biology, Washington University in St. Louis St. Louis, MO, USA
                [3 ]Department of Biology, San Francisco State University San Francisco, CA, USA
                [4 ]Department of Ecology and Evolution, University of Chicago Chicago, IL, USA
                Author notes
                Gabriel G. Perron, Department of Biology, Bard College, Annandale-on-Hudson, New York, NY, USA. Tel.: +1-845-752-2334; fax: +1-845-752-2339; e-mail: gperron@ 123456bard.edu
                Article
                10.1111/eva.12254
                4380916
                25861380
                51b26c6f-4b6f-4f16-88f7-8ac1ae16f7b4
                © 2015 John Wiley & Sons Ltd

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 03 February 2015
                : 18 February 2015
                Categories
                Perspective

                Evolutionary Biology
                adaptation,antibiotic resistance,ecology,epidemiology,experimental evolution,genomics,hiv,malaria,population genetics

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