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      ISG15: It's Complicated

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          Abstract

          Interferon-stimulated gene product 15 (ISG15) is a key component of host responses to microbial infection. Despite having been known for four decades, grasping the functions and features of ISG15 has been a slow and elusive process. Substantial work over the past two decades has greatly enhanced this understanding, revealing the complex and variable nature of this protein. This has unveiled multiple mechanisms of action that are only now beginning to be understood. In addition, it has uncovered diversity not only between how ISG15 affects different pathogens but also between the function and structure of ISG15 itself between different host species. Here we review the complexity of ISG15 within the context of viral infection, focusing primarily on its antiviral function and the mechanisms viruses employ to thwart its effects. We highlight what is known regarding the impact of ISG15 sequence and structural diversity on these interactions and discuss the aspects presenting the next frontier toward elucidating a more complete picture of ISG15 function.

          Graphical abstract

          Highlights

          • ISG15 is one of the most highly upregulated IFN-stimulated proteins.

          • ISG15 is involved in numerous pathways with multiple mechanisms of action.

          • Viruses encode specific countermeasures to combat ISG15 function.

          • ISG15 possesses interspecies sequence diversity impacting structure, function, and viral interactions.

          • Key advances have been made; much work remains to grasp the complexity of ISG15.

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          Most cited references57

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          A small ubiquitin-related polypeptide involved in targeting RanGAP1 to nuclear pore complex protein RanBP2.

          We have found that the mammalian Ran GTPase-activating protein RanGAP1 is highly concentrated at the cytoplasmic periphery of the nuclear pore complex (NPC), where it associates with the 358-kDa Ran-GTP-binding protein RanBP2. This interaction requires the ATP-dependent posttranslational conjugation of RanGAP1 with SUMO-1 (for small ubiquitin-related modifier), a novel protein of 101 amino acids that contains low but significant homology to ubiquitin. SUMO-1 appears to represent the prototype for a novel family of ubiquitin-related protein modifiers. Inhibition of nuclear protein import resulting from antibodies directed at NPC-associated RanGAP1 cannot be overcome by soluble cytosolic RanGAP1, indicating that GTP hydrolysis by Ran at RanBP2 is required for nuclear protein import.
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            ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information.

            We recently developed algorithmic tools for the identification of functionally important regions in proteins of known three dimensional structure by estimating the degree of conservation of the amino-acid sites among their close sequence homologues. Projecting the conservation grades onto the molecular surface of these proteins reveals patches of highly conserved (or occasionally highly variable) residues that are often of important biological function. We present a new web server, ConSurf, which automates these algorithmic tools. ConSurf may be used for high-throughput characterization of functional regions in proteins. The ConSurf web server is available at:http://consurf.tau.ac.il. A set of examples is available at http://consurf.tau.ac.il under 'GALLERY'.
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              A novel ubiquitin-like modification modulates the partitioning of the Ran-GTPase-activating protein RanGAP1 between the cytosol and the nuclear pore complex

              G Blobel (1996)
              Ran is a nuclear Ras-like GTPase that is required for the bidirectional transport of proteins and ribnucleoproteins across the nuclear pore complex (NPC). A key regulator of the Ran GTP/GDP cycle is the 70-kD Ran-GTPase-activating protein RanGAP1. Here, we report the identification and localization of a novel form of RanGAP1. Using peptide sequence analysis and specific mAbs, RanGAP1 was found to be modified by conjugation to a ubiquitin-like protein. Immunoblot analysis and immunolocalization by light and EM demonstrated that the 70-kD unmodified from of RanGAP1 is exclusively cytoplasmic, whereas the 90-kD modified form of RanGAP1 is associated with the cytoplasmic fibers of the NPC. The modified form of RanGAP1 also appeared to associated with the mitotic spindle apparatus during mitosis. These findings have specific implications for Ran function and broad implications for protein regulation by ubiquitin-like modifications. Moreover, the variety and function of ubiquitin-like protein modifications in the cell may be more diverse than previously realized.
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                Author and article information

                Contributors
                Journal
                J Mol Biol
                J. Mol. Biol
                Journal of Molecular Biology
                Elsevier
                0022-2836
                1089-8638
                16 March 2019
                4 October 2019
                16 March 2019
                : 431
                : 21
                : 4203-4216
                Affiliations
                [1 ]Department of Pharmaceutical and Biomedical Sciences, University of Georgia, Athens, GA 30602, USA
                [2 ]Viral Special Pathogens Branch, Division of High Consequence Pathogens and Pathology, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA
                Author notes
                []Corresponding author. College of Pharmacy, University of Georgia, 422 Pharmacy South, Athens, GA 30602, USA. spegan@ 123456uga.edu
                Article
                S0022-2836(19)30136-6
                10.1016/j.jmb.2019.03.013
                6746611
                30890331
                5272223a-5a87-4a47-a887-96bbe029705e
                © 2019 The Author(s)

                Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.

                History
                : 9 January 2019
                : 26 February 2019
                : 11 March 2019
                Categories
                Article

                Molecular biology
                isgylation,interferon,usp18,dub,rig-i,ifn, interferon,isg15, interferon-stimulated gene product 15,ub, ubiquitin,lfa-1, leukocyte function-associated antigen-1,cchfv, crimean-congo hemorrhagic fever virus,eav, equine arteritis virus,sars-cov, severe acute respiratory syndrome-related coronavirus,mers-cov, middle east respiratory syndrome-related coronavirus,dub, deubiquitinating protein,otu, ovarian tumor domain protease,plp, papain-like protease,isre, ifn response stimulated elements

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