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      Quantitative analysis of single particle trajectories: mean maximal excursion method

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          Abstract

          An increasing number of experimental studies employ single particle tracking to probe the physical environment in complex systems. We here propose and discuss new methods to analyze the time series of the particle traces, in particular, for subdiffusion phenomena. We discuss the statistical properties of mean maximal excursions, i.e., the maximal distance covered by a test particle up to time t. Compared to traditional methods focusing on the mean squared displacement we show that the mean maximal excursion analysis performs better in the determination of the anomalous diffusion exponent. We also demonstrate that combination of regular moments with moments of the mean maximal excursion method provides additional criteria to determine the exact physical nature of the underlying stochastic subdiffusion processes. We put the methods to test using experimental data as well as simulated time series from different models for normal and anomalous dynamics, such as diffusion on fractals, continuous time random walks, and fractional Brownian motion.

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          Physical Nature of Bacterial Cytoplasm

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            Real-time single-molecule imaging of the infection pathway of an adeno-associated virus.

            We describe a method, based on single-molecule imaging, that allows the real-time visualization of the infection pathway of single viruses in living cells, each labeled with only one fluorescent dye molecule. The tracking of single viruses removes ensemble averaging. Diffusion trajectories with high spatial and time resolution show various modes of motion of adeno-associated viruses (AAV) during their infection pathway into living HeLa cells: (i) consecutive virus touching at the cell surface and fast endocytosis; (ii) free and anomalous diffusion of the endosome and the virus in the cytoplasm and the nucleus; and (iii) directed motion by motor proteins in the cytoplasm and in nuclear tubular structures. The real-time visualization of the infection pathway of single AAVs shows a much faster infection than was generally observed so far.
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              Anomalous Diffusion Probes Microstructure Dynamics of Entangled F-Actin Networks

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                Author and article information

                Journal
                25 January 2010
                Article
                10.1016/j.bpj.2009.12.4282
                1001.4412
                5484ce83-a12d-4504-a9d9-4fc02d1d840e

                http://arxiv.org/licenses/nonexclusive-distrib/1.0/

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                Custom metadata
                10 pages, 7 figures, 2 tables. NB: Supplementary material may be found in the downloadable source files
                cond-mat.stat-mech

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