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      Structural and Functional Bases for Broad-Spectrum Neutralization of Avian and Human Influenza A Viruses

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          Abstract

          Influenza virus remains a constant public health threat, owing to its ability to evade immune surveillance through rapid genetic drift and reassortment. Monoclonal antibody (mAb)-based immunotherapy is a promising strategy for disease control. Here we use a human Ab phage display library and H5 hemagglutinin (HA) ectodomain to select ten neutralizing mAbs (nAbs) with a remarkably broad range among Group 1 influenza viruses, including the H5N1 “bird flu” and the H1N1 “Spanish flu” strains. Notably, nine of the Abs utilize the same germline gene, VH1-69. The crystal structure of one mAb bound to H5N1 HA reveals that only the heavy chain inserts into a highly conserved pocket in the HA stem, inhibiting the conformational changes required for membrane fusion. Our studies indicate that nAbs targeting this pocket could provide broad protection against both seasonal and pandemic influenza A infections.

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          Most cited references57

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          Receptor binding and membrane fusion in virus entry: the influenza hemagglutinin.

          Hemagglutinin (HA) is the receptor-binding and membrane fusion glycoprotein of influenza virus and the target for infectivity-neutralizing antibodies. The structures of three conformations of the ectodomain of the 1968 Hong Kong influenza virus HA have been determined by X-ray crystallography: the single-chain precursor, HA0; the metastable neutral-pH conformation found on virus, and the fusion pH-induced conformation. These structures provide a framework for designing and interpreting the results of experiments on the activity of HA in receptor binding, the generation of emerging and reemerging epidemics, and membrane fusion during viral entry. Structures of HA in complex with sialic acid receptor analogs, together with binding experiments, provide details of these low-affinity interactions in terms of the sialic acid substituents recognized and the HA residues involved in recognition. Neutralizing antibody-binding sites surround the receptor-binding pocket on the membrane-distal surface of HA, and the structures of the complexes between neutralizing monoclonal Fabs and HA indicate possible neutralization mechanisms. Cleavage of the biosynthetic precursor HA0 at a prominent loop in its structure primes HA for subsequent activation of membrane fusion at endosomal pH (Figure 1). Priming involves insertion of the fusion peptide into a charged pocket in the precursor; activation requires its extrusion towards the fusion target membrane, as the N terminus of a newly formed trimeric coiled coil, and repositioning of the C-terminal membrane anchor near the fusion peptide at the same end of a rod-shaped molecule. Comparison of this new HA conformation, which has been formed for membrane fusion, with the structures determined for other virus fusion glycoproteins suggests that these molecules are all in the fusion-activated conformation and that the juxtaposition of the membrane anchor and fusion peptide, a recurring feature, is involved in the fusion mechanism. Extension of these comparisons to the soluble N-ethyl-maleimide-sensitive factor attachment protein receptor (SNARE) protein complex of vesicle fusion allows a similar conclusion.
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            Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants

            W Kabsch (1993)
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              Characterization of a novel influenza A virus hemagglutinin subtype (H16) obtained from black-headed gulls.

              In wild aquatic birds and poultry around the world, influenza A viruses carrying 15 antigenic subtypes of hemagglutinin (HA) and 9 antigenic subtypes of neuraminidase (NA) have been described. Here we describe a previously unidentified antigenic subtype of HA (H16), detected in viruses circulating in black-headed gulls in Sweden. In agreement with established criteria for the definition of antigenic subtypes, hemagglutination inhibition assays and immunodiffusion assays failed to detect specific reactivity between H16 and the previously described subtypes H1 to H15. Genetically, H16 HA was found to be distantly related to H13 HA, a subtype also detected exclusively in shorebirds, and the amino acid composition of the putative receptor-binding site of H13 and H16 HAs was found to be distinct from that in HA subtypes circulating in ducks and geese. The H16 viruses contained NA genes that were similar to those of other Eurasian shorebirds but genetically distinct from N3 genes detected in other birds and geographical locations. The European gull viruses were further distinguishable from other influenza A viruses based on their PB2, NP, and NS genes. Gaining information on the full spectrum of avian influenza A viruses and creating reagents for their detection and identification will remain an important task for influenza surveillance, outbreak control, and animal and public health. We propose that sequence analyses of HA and NA genes of influenza A viruses be used for the rapid identification of existing and novel HA and NA subtypes.
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                Author and article information

                Journal
                101186374
                31761
                Nat Struct Mol Biol
                Nature structural & molecular biology
                1545-9993
                1545-9985
                28 April 2009
                22 February 2009
                March 2009
                1 September 2009
                : 16
                : 3
                : 265-273
                Affiliations
                [1 ]Department of Cancer Immunology & AIDS, Dana-Farber Cancer Institute; Department of Medicine, Harvard Medical School, 44 Binney St. JFB 826, Boston, MA 02115, USA
                [2 ]Infectious and Inflammatory Disease Center, Burnham Institute for Medical Research, 10901 North Torrey Pines Road, La Jolla, CA 92037, USA
                [3 ]Influenza Division, Centers for Disease Control and Prevention, National Center for Immunization and Respiratory Diseases, 1600 Clifton Road - Mail Stop G-16 Atlanta, GA 30333, USA
                Author notes
                [*]

                Contributed equally to the study.

                Author Contributions DFCI team. J.S. and A.M. constructed H5-TH04 HA. J.S. and D.A. performed phage display Ab library selections and screening for Abs by ELISA, FACS and pseudo-viruses neutralization assays. J.S., M.A. and T.H. carried out epitope mapping using mutagenesis and FACS analysis. J.S., D.A. and M.A. purified antibodies. J.S. and A.Y. analyzed kinetics of Ab binding with HA protein. J.S performed HA subtype cross-binding and neutralization assay, pseudo-virus binding and fusion inhibition assay. J.S. and W.A.M designed the study, analyzed data, and wrote sections about these studies.

                BIMR team R.C.L supervised all of the work done at BIMR. G.W. and G.C. cloned and expressed recombinant H5 for antibody panning and crystallization. W.C.H expressed F10 scFv and crystallized the F10-HA0 complex. W.C.H., E.S. and B.S. collected diffraction data and solved and refined the structure. L.A.B supervised cloning and expression. W.C.H., L.A.B and R.C.L. wrote sections about these studies.

                CDC team. S.P.D., L.C., H.W. and R.O.D designed the study and performed animal study as well as virology study with wild type viruses. R.O.D wrote sections of these studies. J.S., R.O.D., R.C.L and W.A.M. finalized the paper. All authors commented on the manuscript.

                Correspondence should be addressed to J.S. ( jianhua_sui@ 123456dfci.harvard.edu ), R.O.D. ( rvd6@ 123456cdc.gov ), R.C.L ( rlidding@ 123456burnham.org ), and or W.A.M. ( wayne_marasco@ 123456dfci.harvard.edu ).
                Article
                nihpa103240
                10.1038/nsmb.1566
                2692245
                19234466
                5593ce47-ffde-4eb1-b50a-a6915f88bd9d
                History
                Funding
                Funded by: National Institute of Allergy and Infectious Diseases Extramural Activities : NIAID
                Award ID: P01 AI055789-040001 ||AI
                Categories
                Article

                Molecular biology
                Molecular biology

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