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      Developing a Bayesian adaptive design for a phase I clinical trial: a case study for a novel HIV treatment

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          Abstract

          The design of phase I studies is often challenging, because of limited evidence to inform study protocols. Adaptive designs are now well established in cancer but much less so in other clinical areas. A phase I study to assess the safety, pharmacokinetic profile and antiretroviral efficacy of C34‐PEG 4‐Chol, a novel peptide fusion inhibitor for the treatment of HIV infection, has been set up with Medical Research Council funding. During the study workup, Bayesian adaptive designs based on the continual reassessment method were compared with a more standard rule‐based design, with the aim of choosing a design that would maximise the scientific information gained from the study. The process of specifying and evaluating the design options was time consuming and required the active involvement of all members of the trial's protocol development team. However, the effort was worthwhile as the originally proposed rule‐based design has been replaced by a more efficient Bayesian adaptive design. While the outcome to be modelled, design details and evaluation criteria are trial specific, the principles behind their selection are general. This case study illustrates the steps required to establish a design in a novel context. © 2016 The Authors. Statistics in Medicine Published by John Wiley & Sons Ltd

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          Changes in the risk of death after HIV seroconversion compared with mortality in the general population.

          Mortality among human immunodeficiency virus (HIV)-infected individuals has decreased dramatically in countries with good access to treatment and may now be close to mortality in the general uninfected population. To evaluate changes in the mortality gap between HIV-infected individuals and the general uninfected population. Mortality following HIV seroconversion in a large multinational collaboration of HIV seroconverter cohorts (CASCADE) was compared with expected mortality, calculated by applying general population death rates matched on demographic factors. A Poisson-based model adjusted for duration of infection was constructed to assess changes over calendar time in the excess mortality among HIV-infected individuals. Data pooled in September 2007 were analyzed in March 2008, covering years at risk 1981-2006. Excess mortality among HIV-infected individuals compared with that of the general uninfected population. Of 16,534 individuals with median duration of follow-up of 6.3 years (range, 1 day to 23.8 years), 2571 died, compared with 235 deaths expected in an equivalent general population cohort. The excess mortality rate (per 1000 person-years) decreased from 40.8 (95% confidence interval [CI], 38.5-43.0; 1275.9 excess deaths in 31,302 person-years) before the introduction of highly active antiretroviral therapy (pre-1996) to 6.1 (95% CI, 4.8-7.4; 89.6 excess deaths in 14,703 person-years) in 2004-2006 (adjusted excess hazard ratio, 0.05 [95% CI, 0.03-0.09] for 2004-2006 vs pre-1996). By 2004-2006, no excess mortality was observed in the first 5 years following HIV seroconversion among those infected sexually, though a cumulative excess probability of death remained over the longer term (4.8% [95% CI, 2.5%-8.6%] in the first 10 years among those aged 15-24 years). Mortality rates for HIV-infected persons have become much closer to general mortality rates since the introduction of highly active antiretroviral therapy. In industrialized countries, persons infected sexually with HIV now appear to experience mortality rates similar to those of the general population in the first 5 years following infection, though a mortality excess remains as duration of HIV infection lengthens.
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            Adaptive trial designs: a review of barriers and opportunities

            Adaptive designs allow planned modifications based on data accumulating within a study. The promise of greater flexibility and efficiency stimulates increasing interest in adaptive designs from clinical, academic, and regulatory parties. When adaptive designs are used properly, efficiencies can include a smaller sample size, a more efficient treatment development process, and an increased chance of correctly answering the clinical question of interest. However, improper adaptations can lead to biased studies. A broad definition of adaptive designs allows for countless variations, which creates confusion as to the statistical validity and practical feasibility of many designs. Determining properties of a particular adaptive design requires careful consideration of the scientific context and statistical assumptions. We first review several adaptive designs that garner the most current interest. We focus on the design principles and research issues that lead to particular designs being appealing or unappealing in particular applications. We separately discuss exploratory and confirmatory stage designs in order to account for the differences in regulatory concerns. We include adaptive seamless designs, which combine stages in a unified approach. We also highlight a number of applied areas, such as comparative effectiveness research, that would benefit from the use of adaptive designs. Finally, we describe a number of current barriers and provide initial suggestions for overcoming them in order to promote wider use of appropriate adaptive designs. Given the breadth of the coverage all mathematical and most implementation details are omitted for the sake of brevity. However, the interested reader will find that we provide current references to focused reviews and original theoretical sources which lead to details of the current state of the art in theory and practice.
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              A comparison of two phase I trial designs.

              Phase I cancer chemotherapy trials are designed to determine rapidly the maximum tolerated dose of a new agent for further study. A recently proposed Bayesian method, the continual reassessment method, has been suggested to offer an improvement over the standard design of such trials. We find the previous comparisons did not completely address the relative performance of the designs as they would be used in practice. Our results indicate that with the continual reassessment method, more patients will be treated at very high doses and the trials will take longer to complete. We offer some suggested improvements to both the standard design and the Bayesian method.
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                Author and article information

                Contributors
                alexina.mason@lshtm.ac.uk
                Journal
                Stat Med
                Stat Med
                10.1002/(ISSN)1097-0258
                SIM
                Statistics in Medicine
                John Wiley & Sons, Ltd (Chichester, UK )
                0277-6715
                1097-0258
                27 November 2016
                28 February 2017
                : 36
                : 5 ( doiID: 10.1002/sim.v36.5 )
                : 754-771
                Affiliations
                [ 1 ] Department of Health Services Research and PolicyLondon School of Hygiene and Tropical Medicine 15‐17 Tavistock Place London WC1H 9SHU.K.
                [ 2 ] Imperial Clinical Trials UnitImperial College London 68 Wood Lane London W12 7RHU.K.
                [ 3 ] Section of Infectious Diseases, Department of MedicineImperial College London London W2 1PGU.K.
                [ 4 ]HIV i‐Base
                Author notes
                [*] [* ] Correspondence to: Alexina Mason, Department of Health Services Research and Policy, London School of Hygiene andTropical Medicine, 15‐17 Tavistock Place, London, WC1H 9SH, U.K.

                E‐mail: alexina.mason@ 123456lshtm.ac.uk

                Author information
                http://orcid.org/0000-0003-3146-7466
                Article
                SIM7169 sim.7169
                10.1002/sim.7169
                5412923
                27891651
                56028400-11f7-40a0-accc-27c3600f1c46
                © 2016 The Authors. Statistics in Medicine Published by John Wiley & Sons Ltd

                This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.

                History
                : 21 September 2015
                : 09 August 2016
                : 21 October 2016
                Page count
                Figures: 7, Tables: 2, Pages: 18, Words: 11760
                Funding
                Funded by: Medical Research Council and the National Institute for Health Research (NIHR)
                Funded by: Biomedical Research Centre
                Award ID: (MR/J002178/1)
                Categories
                Research Article
                Research Articles
                Custom metadata
                2.0
                sim7169
                sim7169-hdr-0001
                28 February 2017
                Converter:WILEY_ML3GV2_TO_NLMPMC version:5.0.9 mode:remove_FC converted:02.05.2017

                Biostatistics
                bayesian adaptive designs,dose‐finding studies,continual reassessment method,fusion inhibitor,hiv clinical trials,phase i

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