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      Antifungal Activity of Bacillus Species Against Fusarium and Analysis of the Potential Mechanisms Used in Biocontrol

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          Abstract

          Fusarium is a complex genus of ascomycete fungi that consists of plant pathogens of agricultural relevance. Controlling Fusarium infection in crops that leads to substantial yield losses is challenging. These economic losses along with environmental and human health concerns over the usage of chemicals in attaining disease control are shifting focus toward the use of biocontrol agents for effective control of phytopathogenic Fusarium spp. In the present study, an analysis of the plant-growth promoting (PGP) and biocontrol attributes of four bacilli ( Bacillus simplex 30N-5, B. simplex 11, B. simplex 237, and B. subtilis 30VD-1) has been conducted. The production of cellulase, xylanase, pectinase, and chitinase in functional assays was studied, followed by in silico gene analysis of the PGP-related and biocontrol-associated genes. Of all the bacilli included in this study, B. subtilis 30VD-1 (30VD-1) demonstrated the most effective antagonism against Fusarium spp. under in vitro conditions. Additionally, 100 μg/ml of the crude 1-butanol extract of 30VD-1’s cell-free culture filtrate caused about 40% inhibition in radial growth of Fusarium spp. Pea seed bacterization with 30VD-1 led to considerable reduction in wilt severity in plants with about 35% increase in dry plant biomass over uninoculated plants growing in Fusarium-infested soil. Phase contrast microscopy demonstrated distortions and abnormal swellings in F. oxysporum hyphae on co-culturing with 30VD-1. The results suggest a multivariate mode of antagonism of 30VD-1 against phytopathogenic Fusarium spp., by producing chitinase, volatiles, and other antifungal molecules, the characterization of which is underway.

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          Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen.

          The interaction of the direct dye Congo red with intact beta-D-glucans provides the basis for a rapid and sensitive assay system for bacterial strains possessing beta-(1 leads to 4),(1 leads to 3)-D-glucanohydrolase, beta-(1 leads to 4)-D-glucanohydrolase, and beta-(1 leads to 3)-D-glucanohydrolase activities. A close correspondence was observed between cellulolytic activity and beta-(1 leads to 4)-D-glucanohydrolase and beta-(1 leads to 4),(1 leads to 3)-D-glucanohydrolase activities in isolates from the bovine rumen. Many of these isolates also possessed beta-(1 leads to 3)-D-glucanohydrolase activity, and this characteristic may have taxonomic significance.
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            Portraying mechanics of plant growth promoting rhizobacteria (PGPR): A review

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              Bacterial chitin degradation—mechanisms and ecophysiological strategies

              Chitin is one the most abundant polymers in nature and interacts with both carbon and nitrogen cycles. Processes controlling chitin degradation are summarized in reviews published some 20 years ago, but the recent use of culture-independent molecular methods has led to a revised understanding of the ecology and biochemistry of this process and the organisms involved. This review summarizes different mechanisms and the principal steps involved in chitin degradation at a molecular level while also discussing the coupling of community composition to measured chitin hydrolysis activities and substrate uptake. Ecological consequences are then highlighted and discussed with a focus on the cross feeding associated with the different habitats that arise because of the need for extracellular hydrolysis of the chitin polymer prior to metabolic use. Principal environmental drivers of chitin degradation are identified which are likely to influence both community composition of chitin degrading bacteria and measured chitin hydrolysis activities.
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                Author and article information

                Contributors
                Journal
                Front Microbiol
                Front Microbiol
                Front. Microbiol.
                Frontiers in Microbiology
                Frontiers Media S.A.
                1664-302X
                02 October 2018
                2018
                : 9
                : 2363
                Affiliations
                [1] 1Departments of Molecular, Cell, and Developmental Biology, University of California, Los Angeles , Los Angeles, CA, United States
                [2] 2Center for Education Innovation and Learning in the Sciences, University of California, Los Angeles , Los Angeles, CA, United States
                [3] 3Department of Environmental Hydrology and Microbiology, Zuckerberg Institute for Water Research, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev , Beersheba, Israel
                [4] 4Molecular Biology Institute, University of California, Los Angeles , Los Angeles, CA, United States
                Author notes

                Edited by: Sharon Lafferty Doty, University of Washington, United States

                Reviewed by: Giuseppe Spano, University of Foggia, Italy; Susanne Zeilinger, Universität Innsbruck, Austria

                *Correspondence: Ann M. Hirsch, ahirsch@ 123456ucla.edu

                These authors have contributed equally to this work as first authors

                Present address: Pilar Martínez-Hidalgo, Departamento de Microbiología y Genética, Universidad de Salamanca, Salamanca, Spain Najmeh Nejat, Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS, United States

                This article was submitted to Microbial Symbioses, a section of the journal Frontiers in Microbiology

                Article
                10.3389/fmicb.2018.02363
                6176115
                30333816
                57046fb0-e000-4a33-a372-f310fdb03893
                Copyright © 2018 Khan, Martínez-Hidalgo, Ice, Maymon, Humm, Nejat, Sanders, Kaplan and Hirsch.

                This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

                History
                : 29 May 2018
                : 14 September 2018
                Page count
                Figures: 4, Tables: 2, Equations: 0, References: 57, Pages: 12, Words: 0
                Funding
                Funded by: National Science Foundation 10.13039/100000001
                Award ID: 1201735
                Funded by: U.S. Department of Energy 10.13039/100000015
                Award ID: DE-AC02-05CH11231
                Categories
                Microbiology
                Original Research

                Microbiology & Virology
                plant growth promoting bacteria,biocontrol bacteria,bacillus,fusarium,hydrolytic enzymes

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