For Publishers
DiscoveryMetadataPeer reviewHostingPublishing
For Researchers
JoinPublishReviewCollect
Register
Blog
About
Search
Advanced search
My ScienceOpen
Search
For Publishers
For Researchers
Blog
About
184
views
10
references
 Top references
cited by
6
    
0 reviews
 Review
0
comments
 Comment
0
recommends
+1 Recommend
0 collections
    0
    shares
      133
      similar
       All similar
      • Record: found
      • Abstract: found
      • Article: found
      Is Open Access

      Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300 T)

      research-article
      Author(s): 1 , 2 , 3 , 1 , 1 , 1 , 1 , 1 , 1 , 1 , 1 , 3 , 1 , 3 , 1 , 3 , 1 , 3 , 1 , 1 , 1 , 1 , 1 , 1 , 4 , 4 , 1 , 5 , 1 , 5 , 1 , 5 , 1 , 5 , 1 , 3 , 6 , 2 , 1 ,   1 , 7 , 4 , 1 , 1 , 6 , * , 1
      Publication date (Electronic):
      Journal: Standards in Genomic Sciences
      Publisher: Michigan State University
      Keywords: anaerobic, mesophile, nonmotile, non-sporeforming, Gram-negative, termite intestine, ‘Fusobacteria’, ‘Leptotrichiaceae’, GEBA

      Read this article at

      ScienceOpenPublisherPMC
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          Sebaldella termitidis (Sebald 1962) Collins and Shah 1986, is the only species in the genus Sebaldella within the fusobacterial family ‘ Leptotrichiaceae’ . The sole and type strain of the species was first isolated about 50 years ago from intestinal content of Mediterranean termites. The species is of interest for its very isolated phylogenetic position within the phylum Fusobacteria in the tree of life, with no other species sharing more than 90% 16S rRNA sequence similarity. The 4,486,650 bp long genome with its 4,210 protein-coding and 54 RNA genes is part of the G enomic E ncyclopedia of B acteria and A rchaea project.

          Related collections

          Most cited references10

          • Record: found
          • Abstract: found
          • Article: not found

          Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.

          C Woese, O Kandler, M L Wheelis (1990)
          Molecular structures and sequences are generally more revealing of evolutionary relationships than are classical phenotypes (particularly so among microorganisms). Consequently, the basis for the definition of taxa has progressively shifted from the organismal to the cellular to the molecular level. Molecular comparisons show that life on this planet divides into three primary groupings, commonly known as the eubacteria, the archaebacteria, and the eukaryotes. The three are very dissimilar, the differences that separate them being of a more profound nature than the differences that separate typical kingdoms, such as animals and plants. Unfortunately, neither of the conventionally accepted views of the natural relationships among living systems--i.e., the five-kingdom taxonomy or the eukaryote-prokaryote dichotomy--reflects this primary tripartite division of the living world. To remedy this situation we propose that a formal system of organisms be established in which above the level of kingdom there exists a new taxon called a "domain." Life on this planet would then be seen as comprising three domains, the Bacteria, the Archaea, and the Eucarya, each containing two or more kingdoms. (The Eucarya, for example, contain Animalia, Plantae, Fungi, and a number of others yet to be defined). Although taxonomic structure within the Bacteria and Eucarya is not treated herein, Archaea is formally subdivided into the two kingdoms Euryarchaeota (encompassing the methanogens and their phenotypically diverse relatives) and Crenarchaeota (comprising the relatively tight clustering of extremely thermophilic archaebacteria, whose general phenotype appears to resemble most the ancestral phenotype of the Archaea.
          Article 0 comments Cited 1051 times – based on 0 reviews     Review now
            Bookmark
            • Record: found
            • Abstract: found
            • Article: not found

            The minimum information about a genome sequence (MIGS) specification.

            Dawn Field, George Garrity, Tanya Gray … (2008)
            With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activities must proceed within the auspices of open-access and international working bodies. To tackle the issues surrounding the development of better descriptions of genomic investigations, we have formed the Genomic Standards Consortium (GSC). Here, we introduce the minimum information about a genome sequence (MIGS) specification with the intent of promoting participation in its development and discussing the resources that will be required to develop improved mechanisms of metadata capture and exchange. As part of its wider goals, the GSC also supports improving the 'transparency' of the information contained in existing genomic databases.
            Article 0 comments Cited 820 times – based on 0 reviews     Review now
              Bookmark
              • Record: found
              • Abstract: found
              • Article: found
              Is Open Access

              The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

              Konstantinos Liolios, I-Min Chen, Konstantinos Mavromatis … (2010)
              The Genomes On Line Database (GOLD) is a comprehensive resource for centralized monitoring of genome and metagenome projects worldwide. Both complete and ongoing projects, along with their associated metadata, can be accessed in GOLD through precomputed tables and a search page. As of September 2009, GOLD contains information for more than 5800 sequencing projects, of which 1100 have been completed and their sequence data deposited in a public repository. GOLD continues to expand, moving toward the goal of providing the most comprehensive repository of metadata information related to the projects and their organisms/environments in accordance with the Minimum Information about a (Meta)Genome Sequence (MIGS/MIMS) specification. GOLD is available at: http://www.genomesonline.org and has a mirror site at the Institute of Molecular Biology and Biotechnology, Crete, Greece, at: http://gold.imbb.forth.gr/
              Article 0 comments Cited 232 times – based on 0 reviews     Review now
                Bookmark
                All references

                Author and article information

                Journal
                Journal ID (nlm-ta): Stand Genomic Sci
                Journal ID (publisher-id): SIGS
                Title: Standards in Genomic Sciences
                Publisher: Michigan State University
                ISSN (Electronic): 1944-3277
                Publication date (Electronic): 30 March 2010
                Publication date Collection: 30 April 2010
                Volume: 2
                Issue: 2
                Pages: 220-227
                Affiliations
                [1 ]DOE Joint Genome Institute, Walnut Creek, California, USA
                [2 ]ATCC- American Type Culture Collection, Manassas, Virginia, USA
                [3 ]Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA
                [4 ]Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA
                [5 ]Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
                [6 ]DSMZ – German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig,
                [7 ]University of California Davis Genome Center, Davis, California, USA
                Author notes
                [* ]Corresponding author: Hans-Peter Klenk
                Article
                Publisher ID: sigs.811799
                DOI: 10.4056/sigs.811799
                PMC ID: 3035275
                PubMed ID: 21304705
                SO-VID: 578a6521-5439-408b-b23f-24f341cf2647
                Copyright statement: Copyright @ 2010
                License:

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

                History
                Funding
                Funded by: US Department of Energy's Office of Science, Biological and Environmental Research Program
                Award ID: DE-AC02-05CH11231
                Award ID: DE-AC52-07NA27344
                Award ID: DE-AC02-06NA25396
                Categories
                Subject: Short Genome Reports

                ScienceOpen disciplines: Genetics
                Keywords: gram-negative,nonmotile,mesophile,geba,termite intestine,‘fusobacteria’,non-sporeforming,‘leptotrichiaceae’,anaerobic
                Data availability:
                ScienceOpen disciplines: Genetics
                Keywords: gram-negative, nonmotile, mesophile, geba, termite intestine, ‘fusobacteria’, non-sporeforming, ‘leptotrichiaceae’, anaerobic

                Comments

                Comment on this article

                scite_

                Similar content133

                See all similar

                Cited by6

                See all cited by