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      Timely development of vaccines against SARS-CoV-2

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      Emerging Microbes & Infections
      Taylor & Francis

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          Abstract

          The rapidly emerging SARS-2-CoV (SARS-2) has been spreading through China and entering many parts of the world with easy human-to-human transmission and thousands of deaths [1–10]. Development of a vaccine, and a vaccine which can be quickly deployed on a global scale, is no longer merely a discussion or part of a debate whether such a vaccine is ultimately needed. Why is a vaccine needed? While the first wave of this outbreak appears to be under control in many parts of China, there are a number of remaining concerns: When will new cases of infection stop emerging from the “ground zero” Wuhan City? Since the real origin of infection is still not fully confirmed, a complete control of infection in Wuhan is essential for a sustained control in the whole country. Will there be any near-term resurging of cluster cases in other parts of China, including regions in Hubei beyond Wuhan, capital of the province? The random cases can be quickly put under control given the highly alert local monitoring systems and well-practiced healthcare teams’ effective work over the last several weeks. But the cluster cases may pose a new threat for their potential to generate another regional outbreak. Will the world, especially those countries less prepared or with less healthcare resources, be able to handle the sudden appearance of cases at their doorstep? The assumption of persistent transmission of SARS-2 at a global scale may no longer be so far-fetched. Even if the virus does not bring a high mortality, the scenario of Community Acquired Coronavirus Infection (CACI) caused by a SARS type virus as part of our daily life will likely disrupt the world social and economic order. The same calls for vaccines against SARS and Zika faded after the peak of those mysterious outbreaks, partially due to no public demand or limited commercial return to the vaccine investment. However, a timely development of vaccines against SARS-2 is needed this time, not only for controlling the infection but also for stabilizing the global mood and bringing the economy back on track. The current efforts to quickly develop a SARS-2 vaccine The good news now is that many entities have taken actions. CEPI (Coalition for Epidemic Preparedness Innovations) [11] announced on January 23, 2020, the funding to three platform vaccine technologies, DNA, mRNA, and “molecular clamp”, to develop vaccines against SARS-2. CEPI's mission is to “accelerate the development of vaccines against emerging infectious diseases and enable equitable access to these vaccines for people during outbreaks.” The current outbreak will be the first major test to CEPI since its establishment in 2017. There is a growing list of global public and private institutions joining the efforts to develop vaccines against SARS-2. The US NIAID Vaccine Research Centre (VRC) is drawing on broad research experience with coronaviruses, combined with a wide network of collaborators from academia, other government agencies, and industry, on the development of various SARS-2 vaccine candidates. Biotech and traditional vaccine companies in many countries announced their plans to quickly develop vaccines using their respective technologies. From very early in the onset of this outbreak, China demonstrated confidence in developing a vaccine against this viral infection. More recently, the official announcement by the Chinese Health Commission indicated that at least five vaccine technologies will be explored: inactivated vaccine, subunit protein vaccine, nucleic acid vaccine, adenoviral vector vaccine, and recombinant influenza viral vector vaccine. With the growing size of the domestic vaccine industry in recent years, China vaccine developers are expected to announce multiple leading candidate vaccines in the near future. What are the challenges The vaccine industry based on the empirical technology has made major contributions to human health over the last 100 years. However, vaccine science is still young in light of the modern immunology and molecular microbiology which have contributed to the requirement of a longer time to develop a new vaccine. Enhanced safety concerns, increasingly complicated manufacturing processes, and related assay requirements are adding to the time and cost for new vaccine development. A new set of rules and standards will need to be adopted to balance the competing scientific, technical, regulatory, and public health considerations, if a quick response SARS-2 vaccine needs to be developed for near future clinical use. In recent years, immune correlates of protection are increasingly asked for a candidate vaccine [12]. Structure-guided antigen design is quite common. At the same time, vaccine development is still far from being a perfect science. The discontinuation of HVTN702 reported within the last few weeks reminded us again of the big gap between science and the development of an HIV vaccine after almost four decades’ effort. Will protective antibody responses be the targeted immune responses for various vaccine programs against SARS-2? Given the potential challenge in quickly organizing efficacy studies, the animal models against challenge will be extremely valuable for selecting the candidates into humans. Traditional vaccine technologies need improvement and a wide variety of new technologies have emerged in the last two decades [13]. Given the unique requirements of a vaccine against the rapidly spreading emerging viral infection, vaccine technologies with previous human study experience will have the advantage, especially for the consideration of safety. Furthermore, whether the developer can quickly move its vaccine technology into a scale-up GMP production for potentially 10-million doses is another challenge. Anyone with an existing facility and the experience of such production will be in a much more favourable position. The challenge to the regulatory agencies for a timely SARS-2 vaccine is similar to that of the vaccine developers. Safety evaluation of a candidate vaccine against SARS-2 will receive high-level attention. The immunopathogenesis plays a major role in SARS-2 infection and thus it is important to ensure that vaccines against this virus should not elicit the same type of detrimental immune responses. This will affect the type of vaccines to be selected and immunogens to be designed. Will a qualified manufacturing process be sufficient for the advancement of a candidate vaccine or it has to be validated? Can the manufacturing and regulatory experience achieved in other countries be applied to the review of a vaccine application in the current country? Can the cell banks or other intermediate products be accepted across country borders? Will the political or commercial considerations become the barriers to the global effort in addressing the urgent need of a SARS-2 vaccine? Finally, the planning should start now on how to let the world have equal access to a successful SARS-2 vaccine if the need is global. The following issues need to be addressed: vaccine ownership, the funding for production at an unprecedented scale, the pricing and supply chain, and the coordinated administration of such a vaccine to achieve the best outcome of full control of the endemic. A vaccine beyond the current outbreak Even if the global spread of SARS-2 is finally under control before a successful vaccine is fully developed, the vaccine community and world public health leaders need to decide whether a SARS-2 vaccine still should be licensed to serve as a template for vaccines in the future to prevent the outbreaks of other SARS-like viruses. Within 18 years, the world has witnessed three major emerging pathogenic beta coronaviruses (SARS, MERS, and SARS-2) entering large human populations. It may not be too ambitious to suggest a vaccine that can provide broad coverage against more than one of these pathogenic viruses to prevent for future outbreaks. It is generally agreed that developing a new vaccine needs many years’ efforts. However, the development of vaccines in recent years against EV71, a highly pathogenic virus causing severe Hand, Foot and Mouth Disease (HFMD) in children, has provided a good example that it is possible to develop a vaccine against a modern emerging infection [14,15]. Hopefully, it can be even faster this time and possibly using newer vaccine technologies.

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          Most cited references13

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          A Novel Coronavirus from Patients with Pneumonia in China, 2019

          Summary In December 2019, a cluster of patients with pneumonia of unknown cause was linked to a seafood wholesale market in Wuhan, China. A previously unknown betacoronavirus was discovered through the use of unbiased sequencing in samples from patients with pneumonia. Human airway epithelial cells were used to isolate a novel coronavirus, named 2019-nCoV, which formed a clade within the subgenus sarbecovirus, Orthocoronavirinae subfamily. Different from both MERS-CoV and SARS-CoV, 2019-nCoV is the seventh member of the family of coronaviruses that infect humans. Enhanced surveillance and further investigation are ongoing. (Funded by the National Key Research and Development Program of China and the National Major Project for Control and Prevention of Infectious Disease in China.)
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            A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster

            Summary Background An ongoing outbreak of pneumonia associated with a novel coronavirus was reported in Wuhan city, Hubei province, China. Affected patients were geographically linked with a local wet market as a potential source. No data on person-to-person or nosocomial transmission have been published to date. Methods In this study, we report the epidemiological, clinical, laboratory, radiological, and microbiological findings of five patients in a family cluster who presented with unexplained pneumonia after returning to Shenzhen, Guangdong province, China, after a visit to Wuhan, and an additional family member who did not travel to Wuhan. Phylogenetic analysis of genetic sequences from these patients were done. Findings From Jan 10, 2020, we enrolled a family of six patients who travelled to Wuhan from Shenzhen between Dec 29, 2019 and Jan 4, 2020. Of six family members who travelled to Wuhan, five were identified as infected with the novel coronavirus. Additionally, one family member, who did not travel to Wuhan, became infected with the virus after several days of contact with four of the family members. None of the family members had contacts with Wuhan markets or animals, although two had visited a Wuhan hospital. Five family members (aged 36–66 years) presented with fever, upper or lower respiratory tract symptoms, or diarrhoea, or a combination of these 3–6 days after exposure. They presented to our hospital (The University of Hong Kong-Shenzhen Hospital, Shenzhen) 6–10 days after symptom onset. They and one asymptomatic child (aged 10 years) had radiological ground-glass lung opacities. Older patients (aged >60 years) had more systemic symptoms, extensive radiological ground-glass lung changes, lymphopenia, thrombocytopenia, and increased C-reactive protein and lactate dehydrogenase levels. The nasopharyngeal or throat swabs of these six patients were negative for known respiratory microbes by point-of-care multiplex RT-PCR, but five patients (four adults and the child) were RT-PCR positive for genes encoding the internal RNA-dependent RNA polymerase and surface Spike protein of this novel coronavirus, which were confirmed by Sanger sequencing. Phylogenetic analysis of these five patients' RT-PCR amplicons and two full genomes by next-generation sequencing showed that this is a novel coronavirus, which is closest to the bat severe acute respiatory syndrome (SARS)-related coronaviruses found in Chinese horseshoe bats. Interpretation Our findings are consistent with person-to-person transmission of this novel coronavirus in hospital and family settings, and the reports of infected travellers in other geographical regions. Funding The Shaw Foundation Hong Kong, Michael Seak-Kan Tong, Respiratory Viral Research Foundation Limited, Hui Ming, Hui Hoy and Chow Sin Lan Charity Fund Limited, Marina Man-Wai Lee, the Hong Kong Hainan Commercial Association South China Microbiology Research Fund, Sanming Project of Medicine (Shenzhen), and High Level-Hospital Program (Guangdong Health Commission).
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              Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan

              ABSTRACT A mysterious outbreak of atypical pneumonia in late 2019 was traced to a seafood wholesale market in Wuhan of China. Within a few weeks, a novel coronavirus tentatively named as 2019 novel coronavirus (2019-nCoV) was announced by the World Health Organization. We performed bioinformatics analysis on a virus genome from a patient with 2019-nCoV infection and compared it with other related coronavirus genomes. Overall, the genome of 2019-nCoV has 89% nucleotide identity with bat SARS-like-CoVZXC21 and 82% with that of human SARS-CoV. The phylogenetic trees of their orf1a/b, Spike, Envelope, Membrane and Nucleoprotein also clustered closely with those of the bat, civet and human SARS coronaviruses. However, the external subdomain of Spike’s receptor binding domain of 2019-nCoV shares only 40% amino acid identity with other SARS-related coronaviruses. Remarkably, its orf3b encodes a completely novel short protein. Furthermore, its new orf8 likely encodes a secreted protein with an alpha-helix, following with a beta-sheet(s) containing six strands. Learning from the roles of civet in SARS and camel in MERS, hunting for the animal source of 2019-nCoV and its more ancestral virus would be important for understanding the origin and evolution of this novel lineage B betacoronavirus. These findings provide the basis for starting further studies on the pathogenesis, and optimizing the design of diagnostic, antiviral and vaccination strategies for this emerging infection.
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                Author and article information

                Journal
                Emerg Microbes Infect
                Emerg Microbes Infect
                TEMI
                temi20
                Emerging Microbes & Infections
                Taylor & Francis
                2222-1751
                2020
                08 March 2020
                : 9
                : 1
                : 542-544
                Affiliations
                Laboratory of Nucleic Acid Vaccines, Department of Medicine, University of Massachusetts Medical School , Worcester, MA, USA
                Author notes
                Article
                1737580
                10.1080/22221751.2020.1737580
                7144304
                32148172
                57fc36f3-c9b4-4b21-a4b1-52cd6331f930
                © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group, on behalf of Shanghai Shangyixun Cultural Communication Co., Ltd

                This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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