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      Patterns of Genetic Diversity in Highly Invasive Species: Cogongrass ( Imperata cylindrica) Expansion in the Invaded Range of the Southern United States (US)

      research-article
      1 , * , 2 , 3
      Plants
      MDPI
      AFLP, genetic diversity, invasive, Poaceae, population genetics, range expansion

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          Abstract

          The spatial expansions of invasive organisms in the novel range are generally expected to follow an isolation-by-distance relationship (IBD) if the invasion is biologically driven; however, many invasions are facilitated anthropogenically. This research focused on the extant expansion patterns of cogongrass ( Imperata cylindrica). Cogongrass is a widespread invasive species throughout the southern United States (US). Patterns of infestation vary among US states. Cogongrass is pyrogenic, and its invasion threatens softwood ( Pinus spp.) plantations, a substantial economic market for this US region. Over 600 individuals were sampled from seven invaded US states, using amplified fragment length polymorphisms (AFLPs) to assess genetic diversity and population structure. We suspected that differences in historical management efforts among US states influenced differences in genetic diversity and structure. We detected two genetic lineages at the highest level of analysis. One genetic lineage was locally restricted, whereas the other was found throughout the study region. Admixed individuals were found in all US states and consistently co-occurred with the dominant lineage, suggesting that secondary contact and hybridization may have facilitated expansion. The widespread prevalence of only one of the two detected genetic lineages suggests a primary genetic lineage responsible for on-going population expansion in the US.

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          Most cited references41

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          Evolutionary genetics of invasive species

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            Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants.

            A compilation was made of 307 studies using nuclear DNA markers for evaluating among- and within-population diversity in wild angiosperms and gymnosperms. Estimates derived by the dominantly inherited markers (RAPD, AFLP, ISSR) are very similar and may be directly comparable. STMS analysis yields almost three times higher values for within-population diversity whereas among-population diversity estimates are similar to those derived by the dominantly inherited markers. Number of sampled plants per population and number of scored microsatellite DNA alleles are correlated with some of the population genetics parameters. In addition, maximum geographical distance between sampled populations has a strong positive effect on among-population diversity. As previously verified with allozyme data, RAPD- and STMS-based analyses show that long-lived, outcrossing, late successional taxa retain most of their genetic variability within populations. By contrast, annual, selfing and/or early successional taxa allocate most of the genetic variability among populations. Estimates for among- and within-population diversity, respectively, were negatively correlated. The only major discrepancy between allozymes and STMS on the one hand, and RAPD on the other hand, concerns geographical range; within-population diversity was strongly affected when the former methods were used but not so in the RAPD-based studies. Direct comparisons between the different methods, when applied to the same plant material, indicate large similarities between the dominant markers and somewhat lower similarity with the STMS-based data, presumably due to insufficient number of analysed microsatellite DNA loci in many studies.
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              Almost forgotten or latest practice? AFLP applications, analyses and advances.

              Amplified fragment length polymorphism (AFLP) DNA fingerprinting is a firmly established molecular marker technique, with broad applications in population genetics, shallow phylogenetics, linkage mapping, parentage analyses, and single-locus PCR marker development. Technical advances have presented new opportunities for data analysis, and recent studies have addressed specific areas of the AFLP technique, including comparison to other genotyping methods, assessment of errors, homoplasy, phylogenetic signal and appropriate analysis techniques. Here we provide a synthesis of these areas and explore new directions for the AFLP technique in the genomic era, with the aim of providing a review that will be applicable to all AFLP-based studies.
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                Author and article information

                Journal
                Plants (Basel)
                Plants (Basel)
                plants
                Plants
                MDPI
                2223-7747
                31 March 2020
                April 2020
                : 9
                : 4
                : 423
                Affiliations
                [1 ]USDA Forest Service, Southern Research Station, Forestry Sciences Laboratory, 320 East Green Street, Athens, GA 30602, USA
                [2 ]Department of Biological Sciences, Old Dominion University, Norfolk, VA 23529, USA
                [3 ]Department of Biological Sciences, Mississippi State University, Mississippi State, MS 39762, USA
                Author notes
                [* ]Correspondence: rima.lucardi@ 123456usda.gov ; Tel.: +1-(706)559-4278
                Author information
                https://orcid.org/0000-0002-8851-2494
                https://orcid.org/0000-0002-7086-9794
                Article
                plants-09-00423
                10.3390/plants9040423
                7238127
                32244271
                58c3e5d2-25a8-4acd-8892-f203ba89f88a
                © 2020 by the authors.

                Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( http://creativecommons.org/licenses/by/4.0/).

                History
                : 11 March 2020
                : 25 March 2020
                Categories
                Article

                aflp,genetic diversity,invasive,poaceae,population genetics,range expansion

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