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      Making Research Data Repositories Visible: The re3data.org Registry

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          Abstract

          Researchers require infrastructures that ensure a maximum of accessibility, stability and reliability to facilitate working with and sharing of research data. Such infrastructures are being increasingly summarized under the term Research Data Repositories (RDR). The project re3data.org–Registry of Research Data Repositories–has begun to index research data repositories in 2012 and offers researchers, funding organizations, libraries and publishers an overview of the heterogeneous research data repository landscape. In July 2013 re3data.org lists 400 research data repositories and counting. 288 of these are described in detail using the re3data.org vocabulary. Information icons help researchers to easily identify an adequate repository for the storage and reuse of their data. This article describes the heterogeneous RDR landscape and presents a typology of institutional, disciplinary, multidisciplinary and project-specific RDR. Further the article outlines the features of re3data.org, and shows how this registry helps to identify appropriate repositories for storage and search of research data.

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          The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.

          The 19th annual Database Issue of Nucleic Acids Research features descriptions of 92 new online databases covering various areas of molecular biology and 100 papers describing recent updates to the databases previously described in NAR and other journals. The highlights of this issue include, among others, a description of neXtProt, a knowledgebase on human proteins; a detailed explanation of the principles behind the NCBI Taxonomy Database; NCBI and EBI papers on the recently launched BioSample databases that store sample information for a variety of database resources; descriptions of the recent developments in the Gene Ontology and UniProt Gene Ontology Annotation projects; updates on Pfam, SMART and InterPro domain databases; update papers on KEGG and TAIR, two universally acclaimed databases that face an uncertain future; and a separate section with 10 wiki-based databases, introduced in an accompanying editorial. The NAR online Molecular Biology Database Collection, available at http://www.oxfordjournals.org/nar/database/a/, has been updated and now lists 1380 databases. Brief machine-readable descriptions of the databases featured in this issue, according to the BioDBcore standards, will be provided at the http://biosharing.org/biodbcore web site. The full content of the Database Issue is freely available online on the Nucleic Acids Research web site (http://nar.oxfordjournals.org/).
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            Data publication in the open access initiative

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              The open archives initiative

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                Author and article information

                Contributors
                Role: Editor
                Journal
                PLoS One
                PLoS ONE
                plos
                plosone
                PLoS ONE
                Public Library of Science (San Francisco, USA )
                1932-6203
                2013
                4 November 2013
                : 8
                : 11
                : e78080
                Affiliations
                [1 ]Deutsches GeoForschungsZentrum GFZ, Library and Information Services (LIS), Potsdam, Germany
                [2 ]Humboldt-Universität zu Berlin, Berlin School of Library and Information Science, Berlin, Germany
                [3 ]Karlsruhe Institute of Technology (KIT), KIT Library, Karlsruhe, Germany
                University of Cape Town, South Africa
                Author notes

                Competing Interests: The authors have declared that no competing interests exist.

                Wrote the paper: HP PV FS RB MK JK HJG JG PS UD. Conceived and implemented the registry: HP PV FS RB MK JK HJG JG PS UD.

                Article
                PONE-D-13-22379
                10.1371/journal.pone.0078080
                3817176
                24223762
                5940fad9-d307-450f-af1c-326d054069e3
                Copyright @ 2013

                This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

                History
                : 28 May 2013
                : 6 September 2013
                Page count
                Pages: 10
                Funding
                The writing of this paper was supported by a grant from the German Research Foundation. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
                Categories
                Research Article

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