27
views
0
recommends
+1 Recommend
0 collections
    0
    shares
      • Record: found
      • Abstract: found
      • Article: not found

      SPARX, a new environment for Cryo-EM image processing.

      Journal of Structural Biology
      Computational Biology, Cryoelectron Microscopy, methods, Image Processing, Computer-Assisted, Software, Software Design, Systems Integration

      Read this article at

      ScienceOpenPublisherPubMed
      Bookmark
          There is no author summary for this article yet. Authors can add summaries to their articles on ScienceOpen to make them more accessible to a non-specialist audience.

          Abstract

          SPARX (single particle analysis for resolution extension) is a new image processing environment with a particular emphasis on transmission electron microscopy (TEM) structure determination. It includes a graphical user interface that provides a complete graphical programming environment with a novel data/process-flow infrastructure, an extensive library of Python scripts that perform specific TEM-related computational tasks, and a core library of fundamental C++ image processing functions. In addition, SPARX relies on the EMAN2 library and cctbx, the open-source computational crystallography library from PHENIX. The design of the system is such that future inclusion of other image processing libraries is a straightforward task. The SPARX infrastructure intelligently handles retention of intermediate values, even those inside programming structures such as loops and function calls. SPARX and all dependencies are free for academic use and available with complete source.

          Related collections

          Author and article information

          Journal
          16931051
          10.1016/j.jsb.2006.07.003

          Chemistry
          Computational Biology,Cryoelectron Microscopy,methods,Image Processing, Computer-Assisted,Software,Software Design,Systems Integration

          Comments

          Comment on this article