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      Unique human immune signature of Ebola virus disease in Guinea

      research-article
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          Abstract

          Despite the magnitude of the Ebola virus disease (EVD) outbreak in West Africa, there is still a fundamental lack of knowledge about the pathophysiology of EVD 1 . In particular, very little is known about human immune responses to Ebola virus (EBOV) 2, 3 . Here, we have for the first time evaluated the physiology of the human T cell immune response in EVD patients at the time of admission at the Ebola Treatment Center (ETC) in Guinea, and longitudinally until discharge or death. Through the use of multiparametric flow cytometry established by the European Mobile Laboratory in the field, we have identified an immune signature that is unique in EVD fatalities. Fatal EVD was characterized by high percentage of CD4 and CD8 T cells expressing the inhibitory molecules cytotoxic T-lymphocyte-associated protein 4 (CTLA-4) and programmed cell death-1 (PD-1), which was correlated with elevated inflammatory markers and high virus load. Conversely, surviving individuals showed significantly lower expression of CTLA-4 and PD-1 as well as lower inflammation despite comparable overall T cell activation. Concommittant with virus clearance, survivors mounted a robust EBOV-specific T cell response. Our findings suggest that dysregulation of the T cell response is a key component of EVD pathophysiology.

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          Most cited references18

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          Human effector and memory CD8+ T cell responses to smallpox and yellow fever vaccines.

          To explore the human T cell response to acute viral infection, we performed a longitudinal analysis of CD8(+) T cells responding to the live yellow fever virus and smallpox vaccines--two highly successful human vaccines. Our results show that both vaccines generated a brisk primary effector CD8(+) T cell response of substantial magnitude that could be readily quantitated with a simple set of four phenotypic markers. Secondly, the vaccine-induced T cell response was highly specific with minimal bystander effects. Thirdly, virus-specific CD8(+) T cells passed through an obligate effector phase, contracted more than 90% and gradually differentiated into long-lived memory cells. Finally, these memory cells were highly functional and underwent a memory differentiation program distinct from that described for human CD8(+) T cells specific for persistent viruses. These results provide a benchmark for CD8(+) T cell responses induced by two of the most effective vaccines ever developed.
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            Transcriptional insights into the CD8(+) T cell response to infection and memory T cell formation.

            After infection, many factors coordinate the population expansion and differentiation of CD8+ effector and memory T cells. Using data of unparalleled breadth from the Immunological Genome Project, we analyzed the CD8+ T cell transcriptome throughout infection to establish gene-expression signatures and identify putative transcriptional regulators. Notably, we found that the expression of key gene signatures can be used to predict the memory-precursor potential of CD8+ effector cells. Long-lived memory CD8+ cells ultimately expressed a small subset of genes shared by natural killer T and γδ T cells. Although distinct inflammatory milieu and T cell precursor frequencies influenced the differentiation of CD8+ effector and memory populations, core transcriptional signatures were regulated similarly, whether polyclonal or transgenic, and whether responding to bacterial or viral model pathogens. Our results provide insights into the transcriptional regulation that influence memory formation and CD8+ T cell immunity.
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              Defective humoral responses and extensive intravascular apoptosis are associated with fatal outcome in Ebola virus-infected patients.

              Ebola virus is very pathogenic in humans. It induces an acute hemorrhagic fever that leads to death in about 70% of patients. We compared the immune responses of patients who died from Ebola virus disease with those who survived during two large outbreaks in 1996 in Gabon. In survivors, early and increasing levels of IgG, directed mainly against the nucleoprotein and the 40-kDa viral protein, were followed by clearance of circulating viral antigen and activation of cytotoxic T cells, which was indicated by the upregulation of FasL, perforin, CD28 and gamma interferon mRNA in peripheral blood mononuclear cells. In contrast, fatal infection was characterized by impaired humoral responses, with absent specific IgG and barely detectable IgM. Early activation of T cells, indicated by mRNA patterns in peripheral blood mononuclear cells and considerable release of gamma interferon in plasma, was followed in the days preceding death by the disappearance of T cell-related mRNA (including CD3 and CD8). DNA fragmentation in blood leukocytes and release of 41/7 nuclear matrix protein in plasma indicated that massive intravascular apoptosis proceeded relentlessly during the last 5 days of life. Thus, events very early in Ebola virus infection determine the control of viral replication and recovery or catastrophic illness and death.
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                Author and article information

                Journal
                0410462
                6011
                Nature
                Nature
                Nature
                0028-0836
                1476-4687
                8 April 2016
                5 May 2016
                05 November 2016
                : 533
                : 7601
                : 100-104
                Affiliations
                [1 ]Heinrich Pette Institute, Leibniz Institute for Experimental Virology, 20251 Hamburg, Germany
                [2 ]Bernhard Nocht Institute for Tropical Medicine, World Health Organization Collaborating Center for Arbovirus and Hemorrhagic Fever Reference and Research, 20359 Hamburg, Germany
                [3 ]German Center for Infection Research (DZIF), Partner Sites Hamburg, Munich, and Marburg, Germany
                [4 ]European Mobile Laboratory Consortium
                [5 ]Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, 1000 Ljubljana, Slovenia
                [8 ]Institute of Experimental Virology, Twincore, Center for Experimental and Clinical Infection Research, 30625 Hannnover, Germany
                [9 ]Hannover Medical School, 30625 Hannover, Germany
                [10 ]National Institute for Infectious Diseases “Lazzaro Spallanzani”, 00149 Rome, Italy
                [11 ]Public Health England, Porton Down, Salisbury SP4 0JG, UK
                [12 ]Public Healh England, Colindale Ave, London NW9 5EQ, UK
                [13 ]Robert Koch Institute, 13353 Berlin, Germany
                [14 ]Friedrich Loeffler Institute, 17493 Greifswald-Island of Riems, Germany
                [15 ]Swiss Tropical and Public Health Institute, 4051 Basel, Switzerland
                [16 ]Institute of Infection and Global Health, University of Liverpool, Liverpool L69 7BE, UK
                [17 ]Bundeswehr Institute of Microbiology, 80937 Munich, Germany
                [18 ]Institute of Virology, Philipps University, 35043 Marburg, Germany
                [19 ]Laboratoire P4-Jean Mérieux, INSERM, Lyon, France
                [20 ]National Center for Epidemiology, Hungarian National Biosafety Laboratory, H1097 Budapest, Hungary
                [21 ]European Centre for Disease Prevention and Control, 171 65, Solna, Sweden
                [22 ]Federal Office for Civil Protection, CH-3700 Spiez, Switzerland
                [23 ]Unité de Biologie des Infections Virales Emergentes, Institut Pasteur, 69365 Lyon, France
                [24 ]Eurice, European Research and Project Office GmbH, 10115 Berlin, Germany
                [25 ]World Health Organization, Geneva, Switzerland
                [26 ]Infectious Diseases Unit, Internal Medicine Service, Hospital La Paz, 28046 Madrid, Spain
                [27 ]National Center of Microbiology, Institute of Health “Carlos III”, 28220 Madrid, Spain
                [28 ]University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
                [29 ]Médecins sans Frontières, Brussels, Belgium
                [29 ]Cancer and Inflammation Program, Laboratory of Experimental Immunology, Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD 21702
                [30 ]Ragon Institute of MGH, MIT and Harvard, Cambridge, MA 02139
                [31 ]Hospital Militar Central Dr. Carlos J. Finlay, Havana, Cuba
                [32 ]Institut National de Santé Publique, Conakry, Guinea
                [33 ]Université Gamal Abdel Nasser de Conakry, Laboratoire des Fièvres Hémorragiques en Guinée, Conakry, Guinea
                Author notes
                Correspondence and request for materials should be addressed to cesar.munoz-fontela@ 123456hpi.uni-hamburg.de and guenther@ 123456bni.uni-hamburg.de
                [*]

                These authors contributed equally to this work.

                Article
                NIHMS774699
                10.1038/nature17949
                4876960
                27147028
                5aa2a4ab-ae0c-460a-8003-9dd3fea15a24

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